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(-) Description

Title :  CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN IN THE PRESENCE OF 15 MM ZINC AT PH 6.5
 
Authors :  K. B. Handing, I. G. Shabalin, D. R. Cooper, O. A. Gasiorowska, S. C. Almo New York Structural Genomics Research Consortium (Nysgrc)
Date :  01 Mar 16  (Deposition) - 16 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. B. Handing, I. G. Shabalin, O. Kassaar, S. Khazaipoul, C. A. Blindauerd, A. J. Stewart, M. Chruszcz, W. Minor
Structural Studies Of Zinc Carrier Sites In Human And Horse Serum Albumins.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERUM ALBUMIN
    Chains: A
    Fragment: RESIDUES 25-607
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric/Biological Unit (3, 19)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
2UNL2Ligand/IonUNKNOWN LIGAND
3ZN11Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:3 , GLU A:6 , HOH A:758 , HOH A:795binding site for residue ZN A 601
02AC2SOFTWAREHIS A:67 , ASP A:248 , HOH A:902 , HOH A:953binding site for residue ZN A 602
03AC3SOFTWAREHIS A:18 , HOH A:789 , HOH A:959 , HOH A:974binding site for residue ZN A 603
04AC4SOFTWAREHIS A:145 , HOH A:913 , HOH A:933 , HOH A:956binding site for residue ZN A 604
05AC5SOFTWAREASP A:311 , HIS A:317 , HOH A:702 , HOH A:903binding site for residue ZN A 605
06AC6SOFTWAREGLU A:152 , HIS A:156 , HIS A:287 , HOH A:900binding site for residue ZN A 606
07AC7SOFTWAREARG A:435 , HIS A:451 , HOH A:909 , HOH A:943 , HOH A:968binding site for residue ZN A 607
08AC8SOFTWAREGLU A:517 , HOH A:778 , HOH A:927 , HOH A:938binding site for residue ZN A 608
09AC9SOFTWARETYR A:149 , HIS A:241 , HOH A:705 , HOH A:756 , HOH A:934binding site for residue ZN A 609
10AD1SOFTWAREASP A:38 , ALA A:78 , HOH A:701 , HOH A:785binding site for residue ZN A 610
11AD2SOFTWARETHR A:507 , HIS A:509binding site for residue ZN A 611
12AD3SOFTWARELEU A:304 , ALA A:305 , ARG A:336binding site for residue SO4 A 614
13AD4SOFTWARELYS A:499 , LYS A:533 , HOH A:749 , HOH A:881binding site for residue SO4 A 615
14AD5SOFTWAREASP A:163 , LYS A:180 , ARG A:187binding site for residue SO4 A 616
15AD6SOFTWARELYS A:194 , ARG A:217 , LYS A:221 , HOH A:878binding site for residue SO4 A 617
16AD7SOFTWARELYS A:412 , THR A:539 , LYS A:540 , GLU A:541 , SO4 A:619 , HOH A:848binding site for residue SO4 A 618
17AD8SOFTWAREARG A:409 , LYS A:540 , SO4 A:618 , HOH A:842 , HOH A:848binding site for residue SO4 A 619

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:62
2A:75 -A:91
3A:90 -A:101
4A:123 -A:168
5A:167 -A:176
6A:199 -A:245
7A:244 -A:252
8A:264 -A:278
9A:277 -A:288
10A:315 -A:360
11A:359 -A:368
12A:391 -A:437
13A:436 -A:447
14A:460 -A:476
15A:475 -A:486
16A:513 -A:558
17A:557 -A:566

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IIX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IIX)

(-) Exons   (0, 0)

(no "Exon" information available for 5IIX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:577
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhh...........hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhh...........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iix A   3 HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA 583
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162      |176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       
                                                                                                                                                                                                169|                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                 174
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IIX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IIX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IIX)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  ALBU_HORSE | P35747
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALBU_HORSE | P35747: 3v08 4f5t 4f5u 4j2v 4ot2 4zbq 4zbr 5dby 5dqf 5hoz 5id9 5iih 5iiu 5ij5 5ije 5v0v

(-) Related Entries Specified in the PDB File

3v08 CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN
5hoz CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN (ESA) AT PH 9.0
5iih CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN IN THE PRESENCE OF 2.5 MM ZINC AT PH 7.4.
5iiu CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN IN THE PRESENCE OF 10 MM ZINC AT PH 6.9. RELATED ID: NYSGRC-491003 RELATED DB: TARGETTRACK