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(-) Description

Title :  STRUCTURE OF E76Q, A CANCER-ASSOCIATED MUTATION OF THE ONCOGENIC PHOSPHATASE SHP2
 
Authors :  S. C. Blacklow, T. Stams, M. Fodor, J. R. Larochelle
Date :  22 Feb 16  (Deposition) - 13 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tyrosine Phosphatase Shp2, Tyrosine-Protein Phosphatase Non-Receptor Type 11, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Larochelle, M. Fodor, X. Xu, I. Durzynska, L. Fan, T. Stams, H. M. Chan, M. J. Lamarche, R. Chopra, P. Wang, P. D. Fortin, M. G. Acker, S. C. Blacklow
Structural And Functional Consequences Of Three Cancer-Associated Mutations Of The Oncogenic Phosphatase Shp2.
Biochemistry V. 55 2269 2016
PubMed-ID: 27030275  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01287

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 1-525
    Gene: PTPN11, PTP2C, SHPTP2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IBS)

(-) Sites  (0, 0)

(no "Site" information available for 5IBS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IBS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IBS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IBS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IBS)

(-) Exons   (0, 0)

(no "Exon" information available for 5IBS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:485
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhh....eeeee....eeeeeee..eeeeeeeee....eee....ee.hhhhhhhhhhhh..........ee...........eeee.hhhhhhhhhhhh....eeeeee.......eeeeeee....eeeeeeeeee..eee........hhhhhhhhhhhh.ee.....ee...ee.....ee..hhhhhhhhhh..hhhhhhhhhh.........hhhhhhhhhhhh...........eee............eeeeeee......eeee......hhhhhhhhhhhhh..eeee....ee..ee...........eeee..eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ibs A   4 RRWFHPNITGVEAENLLLTRGVDGSFLARPPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAQLVQYYMEHGQLKEVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETL 525
                                    13        23        33|       47        57        67        77      ||88 ||    102       112       122       132       142       152  ||   170       180       190       200       210       220       230    || 250       260       270       280       290       300       310  ||   330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520     
                                                        33|                                            84|  90|                                                         155|                                                                    235|                                                                313|                                                                                                                                                                                                         
                                                         38                                             86   95                                                          164                                                                     246                                                                 324                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh...eeeeee.......eeeeeee..eeeeeeee.....eee....ee.hhhhhhhhhhhh........ee................hhhhhhhhhhhh....eeeee....eeeeee...eeeeeeeee..eee........hhhhhhhhhhhh.ee.....ee...ee.....ee..hhhhhhhhhh..hhhhhhhhhh.........hhhhhhhhhhhh............................eeee......eeeee..hhhhhhhhhhhhhhh...eeee....ee..ee...........eeee..eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ibs B   4 RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAQLVQYYMEHHGQLIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRHPGDFVLSVRTGKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPEPVSDYINANIIMPEKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETL 525
                                    13        23        33        43        53        63        73        83    || 100       110       120       130       144       154|      175       185       195       205       215       225       235|      255       265       275       285       295 ||    306      |326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516         
                                                                                                               88|                                       138|        154|                                                                  235|                                                297|           313|                                                                                                                                                                                                         
                                                                                                                96                                        143         166                                                                   246                                                 299            324
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IBS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IBS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IBS)

(-) Gene Ontology  (78, 78)

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 Related Entries

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UniProtKB/Swiss-Prot
        PTN11_HUMAN | Q06124: 2shp 3b7o 3mow 3o5x 3tkz 3tl0 3zm0 3zm1 3zm2 3zm3 4dgp 4dgx 4gwf 4h1o 4h34 4je4 4jeg 4jmg 4nwf 4nwg 4ohd 4ohe 4ohh 4ohi 4ohl 4pvg 4qsy 4rdd 5df6 5ehp 5ehr 5i6v 5ibm

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5ibm