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(-) Description

Title :  STRUCTURE OF S502P, A CANCER-ASSOCIATED MUTATION OF THE ONCOGENIC PHOSPHATASE SHP2
 
Authors :  S. C. Blacklow, T. Stams, M. Fodor, J. R. Larochelle
Date :  22 Feb 16  (Deposition) - 13 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tyrosine Phosphatase Shp2 S502P, Tyrosine-Protein Phosphatase Non- Receptor Type 11, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Larochelle, M. Fodor, X. Xu, I. Durzynska, L. Fan, T. Stams, H. M. Chan, M. J. Lamarche, R. Chopra, P. Wang, P. D. Fortin, M. G. Acker, S. C. Blacklow
Structural And Functional Consequences Of Three Cancer-Associated Mutations Of The Oncogenic Phosphatase Shp2.
Biochemistry V. 55 2269 2016
PubMed-ID: 27030275  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01287

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Gene: PTPN11, PTP2C, SHPTP2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IBM)

(-) Sites  (0, 0)

(no "Site" information available for 5IBM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IBM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IBM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IBM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IBM)

(-) Exons   (0, 0)

(no "Exon" information available for 5IBM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhh....eeeeee...eeeeeeee..eeeeeeeee....eee....ee.hhhhhhhhhhhh........ee................hhhhhhhhhhhhh...eeeeee.....eeeeeee...eeeeeeeeee..eee........hhhhhhhhhhhh.ee.....ee...ee.....ee..hhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...........eee..........eeeeeee.......eeee...hhhhhhhhhhhhhhhh..eeee....ee..ee...........eeee..eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeee...........hhhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ibm A   4 RRWFHPNITGVEAENLLLTRGVDGSFLARPSPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHQLKEIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESHPGDFVLSVRTGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPPVSDYINANIIMPEFKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRPGMVQTEAQYRFIYMAVQHYIETL 525
                                    13        23        33||      46        56        66        76       |88 ||    103       113       123       133      |145       164       174       184       194       204       214       224       234||     254       264       274       284       294  ||   306       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525
                                                         34|                                            84| 90|                                         140|        154|                                                                    235|                                                297|           314|                                                                                                                                                                                                         
                                                          38                                             87  96                                          143         164                                                                     246                                                 300            324                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:482
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh...eeeeee......eeeeeee..eeeeeeee.....eee....ee.hhhhhhhhhhhh.......ee................hhhhhhhhhhhhh...eeeeee......eeeeeee...eeeeeeeeee..eee........hhhhhhhhhhhh.ee.....ee...ee.....ee..hhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...........................eeee.......eeee...hhhhhhhhhhhhhhh...eeee....ee..ee...........eeee..eeeeeeeeee...eeeeeeeeee.......eeeeeeee...........hhhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ibm B   3 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHQLVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESSHPGDFVLSVRTGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPPVSDYINANIIMPEPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRPGMVQTEAQYRFIYMAVQHYIET 524
                                    12        22        32   ||   43        53        63        73        83||||   101       111       121       131       142       152 ||    171       181       191       201       211       221       231   ||  251       261       271       281       291     ||303       313|      332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522  
                                                            36|                                            84|||                                          140|         154|                                                                    235|                                                297|          313|                                                                                                                                                                                                         
                                                             38                                             87||                                           142          164                                                                     246                                                 300           323                                                                                                                                                                                                         
                                                                                                             88|                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                              95
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IBM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IBM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IBM)

(-) Gene Ontology  (78, 78)

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  PTN11_HUMAN | Q06124
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UniProtKB/Swiss-Prot
        PTN11_HUMAN | Q06124: 2shp 3b7o 3mow 3o5x 3tkz 3tl0 3zm0 3zm1 3zm2 3zm3 4dgp 4dgx 4gwf 4h1o 4h34 4je4 4jeg 4jmg 4nwf 4nwg 4ohd 4ohe 4ohh 4ohi 4ohl 4pvg 4qsy 4rdd 5df6 5ehp 5ehr 5i6v 5ibs

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5ibs