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(-)Asym./Biol. Unit
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(-) Description

Title :  LEOPARD SYNDROME-ASSOCIATED SHP2/Y279C MUTANT
 
Authors :  Z. H. Yu, J. Xu, C. D. Walls, L. Chen, S. Zhang, L. Wu, L. N. Wang, S. J. Liu, Z
Date :  27 Jan 12  (Deposition) - 06 Mar 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. H. Yu, J. Xu, C. D. Walls, L. Chen, S. Zhang, R. Zhang, L. Wu, L. Wang, S. Liu, Z. Y. Zhang
Structural And Mechanistic Insights Into Leopard Syndrome-Associated Shp2 Mutations.
J. Biol. Chem. V. 288 10472 2013
PubMed-ID: 23457302  |  Reference-DOI: 10.1074/JBC.M113.450023

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
    ChainsA
    EC Number3.1.3.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21A+
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentN-SH2, C-SH2, AND PTP DOMAINS (UNP RESIDUES 1-532)
    GenePTPN11, PTP2C, SHPTP2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSRC HOMOLOGY 2 (SH2)-DOMAIN CONTAINING PROTEIN TYROSINE PHOSPHATASE-2, SHP2, PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SH-PTP3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4DGX)

(-) Sites  (0, 0)

(no "Site" information available for 4DGX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DGX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DGX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (59, 59)

Asymmetric/Biological Unit (59, 59)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_015601T42APTN11_HUMANDisease (NS1)397507501AT42A
02UniProtVAR_027184N58KPTN11_HUMANDisease (NS1)397507506AN58K
03UniProtVAR_066060T59APTN11_HUMANDisease (NS1)  ---AT59A
04UniProtVAR_015602G60APTN11_HUMANDisease (NS1)397507509AG60A
05UniProtVAR_015990G60VPTN11_HUMANPolymorphism397507509AG60V
06UniProtVAR_015603D61GPTN11_HUMANDisease (NS1)121918461AD61G
07UniProtVAR_015604D61NPTN11_HUMANDisease (NS1)397507510AD61N
08UniProtVAR_015991D61VPTN11_HUMANDisease (JMML)121918461AD61V
09UniProtVAR_015992D61YPTN11_HUMANDisease (JMML)  ---AD61Y
10UniProtVAR_015605Y62DPTN11_HUMANDisease (NS1)121918460AY62D
11UniProtVAR_015606Y63CPTN11_HUMANDisease (NS1)121918459AY63C
12UniProtVAR_015993E69KPTN11_HUMANDisease (JMML)  ---AE69K
13UniProtVAR_027185E69QPTN11_HUMANDisease (NS1)397507511AE69Q
14UniProtVAR_015994F71KPTN11_HUMANUnclassified  ---AF71K
15UniProtVAR_015995F71LPTN11_HUMANPolymorphism397507512AF71L
16UniProtVAR_015607A72GPTN11_HUMANDisease (NS1)121918454AA72G
17UniProtVAR_015608A72SPTN11_HUMANDisease (NS1)121918453AA72S
18UniProtVAR_015996A72TPTN11_HUMANDisease (JMML)121918453AA72T
19UniProtVAR_015997A72VPTN11_HUMANDisease (JMML)121918454AA72V
20UniProtVAR_015609T73IPTN11_HUMANDisease (NS1)28933387AT73I
21UniProtVAR_015998E76APTN11_HUMANDisease (JMML)121918465AE76A
22UniProtVAR_015610E76DPTN11_HUMANDisease (NS1)397507514AE76D
23UniProtVAR_015999E76GPTN11_HUMANDisease (JMML)121918465AE76G
24UniProtVAR_016000E76KPTN11_HUMANDisease (JMML)28933388AE76K
25UniProtVAR_016001E76VPTN11_HUMANDisease (JMML)121918465AE76V
26UniProtVAR_027186Q79PPTN11_HUMANDisease (NS1)  ---AQ79P
27UniProtVAR_015611Q79RPTN11_HUMANDisease (NS1)121918466AQ79R
28UniProtVAR_015612D106APTN11_HUMANDisease (NS1)397507517AD106A
29UniProtVAR_015613E139DPTN11_HUMANDisease (NS1)397507520AE139D
30UniProtVAR_027187Q256RPTN11_HUMANDisease (NS1)397507523AQ256R
31UniProtVAR_078101L261FPTN11_HUMANDisease (NS1)397507525AL261F
32UniProtVAR_078102L261HPTN11_HUMANDisease (NS1)765642157AL261H
33UniProtVAR_078103L262FPTN11_HUMANDisease (NS1)  ---AL262F
34UniProtVAR_078104L262RPTN11_HUMANDisease (NS1)397507526AL262R
35UniProtVAR_078105R265QPTN11_HUMANDisease (NS1)376607329AR265Q
36UniProtVAR_015614Y279CPTN11_HUMANDisease (NS1)121918456AC279C
37UniProtVAR_027188Y279SPTN11_HUMANDisease (LPRD1)121918456AC279S
38UniProtVAR_015615I282VPTN11_HUMANDisease (NS1)397507529AI282V
39UniProtVAR_015617F285LPTN11_HUMANDisease (NS1)397507531AF285L
40UniProtVAR_015616F285SPTN11_HUMANDisease (NS1)121918463AF285S
41UniProtVAR_015619N308DPTN11_HUMANDisease (NS1)28933386AN308D
42UniProtVAR_015618N308SPTN11_HUMANDisease (NS1)121918455AN308S
43UniProtVAR_015620I309VPTN11_HUMANUnclassified (NS1)201787206AI309V
44UniProtVAR_027189T415MPTN11_HUMANDisease (NS1)121918467AT411M
45UniProtVAR_027190A465TPTN11_HUMANDisease (LPRD1)121918468AA461T
46UniProtVAR_027191G468APTN11_HUMANDisease (LPRD1)121918469AG464A
47UniProtVAR_015621T472MPTN11_HUMANDisease (LPRD1)121918457AT468M
48UniProtVAR_071706P495SPTN11_HUMANDisease (NS1)397507539AP491S
49UniProtVAR_027192R502LPTN11_HUMANDisease (LPRD1)397507542AR498L
50UniProtVAR_027193R502WPTN11_HUMANDisease (LPRD1)397507541AR498W
51UniProtVAR_015622R505KPTN11_HUMANDisease (NS1)397507543AR501K
52UniProtVAR_015623S506TPTN11_HUMANDisease (NS1)121918458AS502T
53UniProtVAR_016002G507APTN11_HUMANDisease (JMML)397507546AG503A
54UniProtVAR_016003G507RPTN11_HUMANDisease (NS1)397507545AG503R
55UniProtVAR_015624M508VPTN11_HUMANDisease (NS1)397507547AM504V
56UniProtVAR_027194Q510PPTN11_HUMANDisease (LPRD1)397509345AQ506P
57UniProtVAR_027195Q510RPTN11_HUMANDisease (NS1)  ---AQ506R
58UniProtVAR_076499Q514EPTN11_HUMANDisease (NS1)397507549AQ510E
59UniProtVAR_027196Q514PPTN11_HUMANDisease (LPRD1)121918470AQ510P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 5)

Asymmetric/Biological Unit (4, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.PTN11_HUMAN6-102
112-216
  2A:6-102
A:112-216
2TYR_PHOSPHATASE_PTPPS50055 PTP type protein phosphatase family profile.PTN11_HUMAN247-525  1A:247-521
3TYR_PHOSPHATASE_2PS50056 Tyrosine specific protein phosphatases family profile.PTN11_HUMAN440-516  1A:436-512
4TYR_PHOSPHATASE_1PS00383 Tyrosine specific protein phosphatases active site.PTN11_HUMAN461-471  1A:457-467

(-) Exons   (0, 0)

(no "Exon" information available for 4DGX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:501
 aligned with PTN11_HUMAN | Q06124 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:530
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532
          PTN11_HUMAN     3 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQALLQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRR 532
               SCOP domains d4dgxa1 A:3-110 automated matches                                                                           d4dgxa2 A:111-218 automated matches                                                                         d4dgxa3 A:219-528           automated matches                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh....eeeeee.......eeeeeee..eeeeeeeee....eee....ee.hhhhhhhhhh.................ee....hhhhh..eee..hhhhhhhhhhhhh...eeeeee.......eeeeeee............eeeeeeeeee..eee........hhhhhhhhhhhh.ee.....ee...ee.....ee..hhhhhhhhhh.----------.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhh.eee...-----....eeeeeee...----------...eeee......hhhhhhhhhhhh...eeee....ee..ee...........eeee..eeeeeee......eeeeeeeeee..----.....eeeeeeee...........hhhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------A---------------KAAGDC-----K-KGI--A--P--------------------------A--------------------------------D--------------------------------------------------------------------------------------------------------------------R----FF--Q-------------C--V--L----------------------DV---------------------------------------------------------------------------------------------------------M-------------------------------------------------T--A---M----------------------S------L--KTAV-P---E------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------VN-------Q-LS---D--R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HR----------------S-----S----------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----R--R---P------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------V----------T---G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
             SAPs(SNPs) (4) ----------------------------------------------------------Y----------V---K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (4)
             SAPs(SNPs) (5) -------------------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (5)
                PROSITE (1) ---SH2  PDB: A:6-102 UniProt: 6-102                                                                 ---------SH2  PDB: A:112-216 UniProt: 112-216                                                                     ------------------------------TYR_PHOSPHATASE_PTP  PDB: A:247-521 UniProt: 247-525                                                                                                                                                                                                                                   ------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:436-512 UniProt: 440-516                           ---------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA------------------------------------------------------------- PROSITE (3)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dgx A   3 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSK----------GFWEEFETLQQQECKLLYSRKEGQRQENKNKNRCKNILPFDHTRVVLHD-----PVSDYINANIIMPE----------KKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVG----QGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRR 528
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  |      -   |   252       262       272       282       292 |     302       312|        - |     332       342       352       362       372       382       392       402    |  408       418       428       438       448       458       468       478       488       498       508       518       528
                                                                                                                                                                                                                                                                  235        246                                             294   300          313        324                                                                                407  408                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DGX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DGX)

(-) Gene Ontology  (78, 78)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (PTN11_HUMAN | Q06124)
molecular function
    GO:0016303    1-phosphatidylinositol-3-kinase activity    Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + ATP = a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ADP + 2 H(+).
    GO:0031748    D1 dopamine receptor binding    Interacting selectively and non-covalently with a D1 dopamine receptor.
    GO:0005070    SH3/SH2 adaptor activity    Interacting selectively and non-covalently and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g. Grb2) or those of their target molecules (e.g. SAM68).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005158    insulin receptor binding    Interacting selectively and non-covalently with the insulin receptor.
    GO:0043560    insulin receptor substrate binding    Interacting selectively and non-covalently with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex.
    GO:0004726    non-membrane spanning protein tyrosine phosphatase activity    Catalysis of the reaction: non-membrane spanning protein tyrosine phosphate + H2O = non-membrane spanning protein tyrosine + phosphate.
    GO:0051428    peptide hormone receptor binding    Interacting selectively and non-covalently with a receptor for peptide hormones.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
    GO:0046934    phosphatidylinositol-4,5-bisphosphate 3-kinase activity    Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H(+).
    GO:0043274    phospholipase binding    Interacting selectively and non-covalently with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0004725    protein tyrosine phosphatase activity    Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
    GO:0030971    receptor tyrosine kinase binding    Interacting selectively and non-covalently with a receptor that possesses protein tyrosine kinase activity.
biological process
    GO:0060020    Bergmann glial cell differentiation    The process in which neuroepithelial cells of the neural tube give rise to Brgmann glial cells, specialized bipotential progenitors cells of the cerebellum. Differentiation includes the processes involved in commitment of a cell to a specific fate.
    GO:0000077    DNA damage checkpoint    A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
    GO:0038127    ERBB signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptor tyrosine kinases on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0033277    abortive mitotic cell cycle    A cell cycle in which mitosis is begun and progresses normally through the end of anaphase, but not completed, resulting in a cell with increased ploidy.
    GO:0000187    activation of MAPK activity    The initiation of the activity of the inactive enzyme MAP kinase (MAPK).
    GO:0036302    atrioventricular canal development    The progression of the atrioventricular canal over time, from its formation to the mature structure. The atrioventricular canal is the part of the heart connecting the atrium to the cardiac ventricle.
    GO:0007409    axonogenesis    De novo generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells. Refers to the morphogenesis or creation of shape or form of the developing axon.
    GO:0007420    brain development    The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
    GO:0021697    cerebellar cortex formation    The process that gives rise to the cerebellar cortex. This process pertains to the initial formation of a structure from unspecified parts. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0048013    ephrin receptor signaling pathway    The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0060325    face morphogenesis    The process in which the anatomical structures of the face are generated and organized. The face is the ventral division of the head.
    GO:0008543    fibroblast growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands.
    GO:0048806    genitalia development    The process whose specific outcome is the progression of the genitalia over time, from its formation to the mature structure.
    GO:0042593    glucose homeostasis    Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0048873    homeostasis of number of cells within a tissue    Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in a tissue.
    GO:0042445    hormone metabolic process    The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone.
    GO:0009755    hormone-mediated signaling pathway    A series of molecular signals mediated by the detection of a hormone.
    GO:0048839    inner ear development    The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.
    GO:0007229    integrin-mediated signaling pathway    A series of molecular signals initiated by the binding of extracellular ligand to an integrin on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0061582    intestinal epithelial cell migration    The orderly movement of an intestinal epithelial cell from one site to another, often during the development of a multicellular organism.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0035855    megakaryocyte development    The process whose specific outcome is the progression of a megakaryocyte cell over time, from its formation to the mature structure. Megakaryocyte development does not include the steps involved in committing a cell to a megakaryocyte fate. A megakaryocyte is a giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow.
    GO:0032528    microvillus organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell.
    GO:0035264    multicellular organism growth    The increase in size or mass of an entire multicellular organism, as opposed to cell growth.
    GO:0048609    multicellular organismal reproductive process    The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
    GO:0033629    negative regulation of cell adhesion mediated by integrin    Any process that stops, prevents, or reduces the frequency, rate, or extent of cell adhesion mediated by integrin.
    GO:0051463    negative regulation of cortisol secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of cortisol from a cell.
    GO:0060125    negative regulation of growth hormone secretion    Any process that decreases or stops the frequency, rate or extent of the regulated release of growth hormone from a cell.
    GO:0046888    negative regulation of hormone secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a hormone from a cell.
    GO:0046676    negative regulation of insulin secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of insulin.
    GO:0048011    neurotrophin TRK receptor signaling pathway    A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0035265    organ growth    The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function.
    GO:0035335    peptidyl-tyrosine dephosphorylation    The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
    GO:0046854    phosphatidylinositol phosphorylation    The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol.
    GO:0036092    phosphatidylinositol-3-phosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of phosphatidylinositol-3-phosphate, a phosphatidylinositol monophosphate carrying the phosphate group at the 3-position.
    GO:0048015    phosphatidylinositol-mediated signaling    A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0030220    platelet formation    The process in which platelets bud from long processes extended by megakaryocytes.
    GO:0048008    platelet-derived growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of a platelet-derived growth factor receptor binding to one of its physiological ligands.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:2001275    positive regulation of glucose import in response to insulin stimulus    Any process that activates or increases the frequency, rate or extent of glucose import in response to insulin stimulus.
    GO:0046887    positive regulation of hormone secretion    Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell.
    GO:0045931    positive regulation of mitotic cell cycle    Any process that activates or increases the rate or extent of progression through the mitotic cell cycle.
    GO:0009967    positive regulation of signal transduction    Any process that activates or increases the frequency, rate or extent of signal transduction.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0033628    regulation of cell adhesion mediated by integrin    Any process that modulates the frequency, rate, or extent of cell adhesion mediated by integrin.
    GO:0040014    regulation of multicellular organism growth    Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size.
    GO:0014066    regulation of phosphatidylinositol 3-kinase signaling    Any process that modulates the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:0043254    regulation of protein complex assembly    Any process that modulates the frequency, rate or extent of protein complex assembly.
    GO:0046825    regulation of protein export from nucleus    Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm.
    GO:0060338    regulation of type I interferon-mediated signaling pathway    Any process that modulates the rate, frequency or extent of a type I interferon-mediated signaling pathway. A type I interferon-mediated signaling pathway is the series of molecular events generated as a consequence of a type I interferon binding to a cell surface receptor.
    GO:0006641    triglyceride metabolic process    The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTN11_HUMAN | Q061242shp 3b7o 3mow 3o5x 3tkz 3tl0 3zm0 3zm1 3zm2 3zm3 4dgp 4gwf 4h1o 4h34 4je4 4jeg 4jmg 4nwf 4nwg 4ohd 4ohe 4ohh 4ohi 4ohl 4pvg 4qsy 4rdd 5df6 5ehp 5ehr 5i6v 5ibm 5ibs

(-) Related Entries Specified in the PDB File

4dgp WILD-TYPE SHP2