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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE SHP2 CATALYTIC DOMAIN COMPLEX WITH SMALL MOLECULAR COMPOUND L88N79
 
Authors :  Z. -Y. Zhang, L. Zeng, D. Liu, Z. Yu
Date :  17 Mar 14  (Deposition) - 15 Apr 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. -Y. Zhang, L. Zeng, D. Liu, Z. Yu
Crystal Structure Of Protein Tyrosine Shp2 Catalytic Domain Complex With Compound L88N79
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
    ChainsA
    EC Number3.1.3.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GenePTPN11, PTP2C, SHPTP2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
12WT1Ligand/Ion2-[3-({4-[(1,3-BENZODIOXOL-5-YLMETHYL)AMINO]-4-OXOBUTANOYL}AMINO)PHENYL]-6-HYDROXY-3-IODO-1-METHYL-1H-INDOLE-5-CARBOXYLIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:441 , CYS A:459 , SER A:460 , ALA A:461 , ARG A:465 , GLN A:506 , GLN A:510BINDING SITE FOR RESIDUE 2WT A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PVG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PVG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PVG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PVG)

(-) Exons   (0, 0)

(no "Exon" information available for 4PVG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh..........hhhhhhhh...........eee............eeeeeee.....eeeee.....hhhhhhhhhhhhh..eeee....ee..ee...........eeee..eeeeeeeeee...eeeeeeeeee..hhhhheeeeeeee...........hhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pvg A 251 FETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETL 525
                                   260       270       280       290       300       310  ||   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521    
                                                                                        313|                                                                                                                                                                                                        
                                                                                         325                                                                                                                                                                                                        

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PVG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PVG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PVG)

(-) Gene Ontology  (78, 78)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTN11_HUMAN | Q061242shp 3b7o 3mow 3o5x 3tkz 3tl0 3zm0 3zm1 3zm2 3zm3 4dgp 4dgx 4gwf 4h1o 4h34 4je4 4jeg 4jmg 4nwf 4nwg 4ohd 4ohe 4ohh 4ohi 4ohl 4qsy 4rdd 5df6 5ehp 5ehr 5i6v 5ibm 5ibs

(-) Related Entries Specified in the PDB File

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