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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE SHP-2 WITH D61G MUTATION
 
Authors :  W. Qiu, A. Lin, A. Hutchinson, V. Romanov, M. Ruzanov, C. Thompson, K. La G. Kisselman, K. Battaile, N. Y. Chirgadze
Date :  11 Sep 12  (Deposition) - 11 Sep 13  (Release) - 11 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Proteins, Sh2 Domain, Phosphatase Domain, Tyrosine Phosphatase Shp-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Qiu, A. Lin, A. Hutchinson, V. Romanov, M. Ruzanov, C. Thompson, K. Lam, G. Kisselman, K. Battaile, N. Y. Chirgadze
Crystal Structure Of The Tyrosine Phosphatase Shp-2 With D61G Mutation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
    Chains: A
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-SH2, C-SH2 AND PHOSPHATASE DOMAIN
    Gene: PTPN11, PTP2C, SHPTP2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:3 , TRP A:6 , CYS A:259BINDING SITE FOR RESIDUE EDO A 601
2AC2SOFTWAREGLN A:335 , LYS A:369 , GLU A:532 , HOH A:734BINDING SITE FOR RESIDUE EDO A 602
3AC3SOFTWAREMET A:516 , GLN A:519 , HIS A:520BINDING SITE FOR RESIDUE EDO A 603
4AC4SOFTWARELYS A:131 , SER A:165BINDING SITE FOR RESIDUE EDO A 604
5AC5SOFTWAREGLY A:60 , TRP A:423 , GLY A:427 , VAL A:428 , ARG A:465 , GLN A:510 , HOH A:782BINDING SITE FOR RESIDUE EDO A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H1O)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:83 -His A:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H1O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H1O)

(-) Exons   (0, 0)

(no "Exon" information available for 4H1O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4h1oa1 A:2-110 automated matches                                                                        d4h1oa2 A:111-218 automated matches                                                                   d4h1oa3 A:219-532 automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh....eeeeee.......eeeeeee..eeeeeeeee....eee....ee.hhhhhhhhh..............ee...........eee..hhhhhhhhhhhh....eeeeee.......eeeeeee......eeeeeeeeee..eee........hhhhhhhhhhhh.ee.....ee...ee.....ee..hhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh......................eeee.......eeee......hhhhhhhhhhhhh..eeee....ee..ee...........eeee..eeeeeeeeee...eeeeeeeeee.......eeeeeeee...........hhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h1o A   2 TSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGGYYDLYGGEKFATLAELVQYYMEHHGQLKDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTSNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDSDYINANIIMPEFKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEE 532
                                    11        21        31        41        51        61        71        81       |95       105       115       125       135       145       161       171       181       191       201       211       221       231   ||  250       260       270       280       290   ||  307      |326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526      
                                                                                                                  89|                                                        153|                                                                        235|                                              294|         314|                                                                                                                                                                                                                
                                                                                                                   94                                                         160                                                                         245                                               302          324
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H1O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H1O)

(-) Gene Ontology  (78, 78)

Asymmetric/Biological Unit(hide GO term definitions)

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    Glu A:83 - His A:84   [ RasMol ]  
 

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  PTN11_HUMAN | Q06124
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTN11_HUMAN | Q06124: 2shp 3b7o 3mow 3o5x 3tkz 3tl0 3zm0 3zm1 3zm2 3zm3 4dgp 4dgx 4gwf 4h34 4je4 4jeg 4jmg 4nwf 4nwg 4ohd 4ohe 4ohh 4ohi 4ohl 4pvg 4qsy 4rdd 5df6 5ehp 5ehr 5i6v 5ibm 5ibs

(-) Related Entries Specified in the PDB File

4gwf THE SAME PROTEIN WITH Y279C MUTATION