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(-) Description

Title :  DISSECTING THERAPEUTIC RESISTANCE TO ERK INHIBITION RAT WILD TYPE SCH772984 IN COMPLEX WITH (3R)-1-(2-OXO-2-{4-[4-(PYRIMIDIN-2-YL) PHENYL]PIPERAZIN-1-YL}ETHYL)-N-[3-(PYRIDIN-4-YL)-2H-INDAZOL-5-YL]PYRROLIDINE-3-CARBOXAMIDE
 
Authors :  S. Jha, E. J. Morris, A. Hruza, M. S. Mansueto, G. Schroeder, J. Arbanas, D. Mcmasters, C. R. Restaino, R. Dayananth, S. Black, N. L. Elsen, A. Ma A. Cooper, S. Fawell, L. Zawel, L. Jayaraman, A. A. Samatar
Date :  04 Jan 16  (Deposition) - 24 Feb 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Serine/Threonine-Protein Kinase, Map Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Jha, E. J. Morris, A. Hruza, M. S. Mansueto, G. K. Schroeder, J. Arbanas, D. Mcmasters, C. R. Restaino, P. Dayananth, S. Black, N. L. Elsen, A. Mannarino, A. Cooper, S. Fawell, L. Zawel, L. Jayaraman A. A. Samatar
Dissecting Therapeutic Resistance To Erk Inhibition.
Mol. Cancer Ther. V. 15 548 2016
PubMed-ID: 26832798  |  Reference-DOI: 10.1158/1535-7163.MCT-15-0172

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MAPK1, ERK2, MAPK, PRKM1
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
138Z1Ligand/Ion(3R)-1-(2-OXO-2-{4-[4-(PYRIMIDIN-2-YL)PHENYL]PIPERAZIN-1-YL}ETHYL)-N-[3-(PYRIDIN-4-YL)-2H-INDAZOL-5-YL]PYRROLIDINE-3-CARBOXAMIDE
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:33 , TYR A:34 , ALA A:50 , LYS A:52 , TYR A:62 , ARG A:65 , THR A:66 , GLU A:69 , GLN A:103 , ASP A:104 , MET A:106 , GLU A:107 , THR A:108 , LYS A:112 , LEU A:154 , ASP A:165 , GLY A:167 , HOH A:505 , HOH A:599 , HOH A:687binding site for residue 38Z A 401
2AC2SOFTWARETYR A:185 , ARG A:189 , ARG A:192 , TYR A:231 , HOH A:534 , HOH A:609 , HOH A:615binding site for residue SO4 A 402
3AC3SOFTWAREASN A:121 , ASP A:122 , GLY A:180 , LYS A:257 , HOH A:581 , HOH A:584 , HOH A:661 , HOH A:666 , HOH A:698binding site for residue SO4 A 403
4AC4SOFTWAREARG A:65 , ARG A:68 , LEU A:168 , ARG A:170 , VAL A:186 , HOH A:616 , HOH A:632binding site for residue SO4 A 404
5AC5SOFTWAREHIS A:123 , ASN A:156binding site for residue PG4 A 405
6AC6SOFTWAREGLY A:32 , ALA A:33 , HOH A:624 , HOH A:712binding site for residue DMS A 406
7AC7SOFTWAREHIS A:59 , GLN A:60 , LYS A:338 , HOH A:626binding site for residue DMS A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HD4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:20 -Pro A:21

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HD4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HD4)

(-) Exons   (0, 0)

(no "Exon" information available for 5HD4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....ee.....eeeeeeeeee..eeeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh................hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hd4 A   9 PEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPG 355
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HD4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HD4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HD4)

(-) Gene Ontology  (89, 89)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_RAT | P63086: 1erk 1gol 2erk 2fys 2gph 2z7l 3c9w 3erk 3o71 3qyw 3qyz 3r63 3zu7 3zuv 4erk 4gsb 4gt3 4gva 4i5h 4n4s 4qyy 4s2z 4s30 4s31 4s32 4s33 4s34 4xne 4xoy 4xoz 4xp0 4xp2 4xp3 4xrj 4xrl 5hd7 5ke0 5u6i 5umo

(-) Related Entries Specified in the PDB File

5hd7