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(-) Description

Title :  CRYSTAL STRUCTURE OF ERK2 IN COMPLEX WITH AN INHIBITOR
 
Authors :  M. Gelin, F. Allemand, G. Labesse, J. F. Guichou
Date :  16 Jan 15  (Deposition) - 12 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Serine/Threonine-Protein Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Gelin, V. Delfosse, F. Allemand, F. Hoh, Y. Sallaz-Damaz, M. Pirocchi, W. Bourguet, J. L. Ferrer, G. Labesse, J. F. Guichou
Combining `Dry' Co-Crystallization And In Situ Diffraction To Facilitate Ligand Screening By X-Ray Crystallography.
Acta Crystallogr. , Sect. D V. 71 1777 2015
PubMed-ID: 26249358  |  Reference-DOI: 10.1107/S1399004715010342

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    ChainsA
    EC Number2.7.11.24
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 8-358
    GeneMAPK1, ERK2, MAPK, PRKM1
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymMAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CME4Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2DX41Ligand/Ion2-AMINO-1,9-DIHYDRO-6H-PURINE-6-THIONE
3SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:50 , LYS A:52 , GLN A:103 , ASP A:104 , MET A:106 , CME A:164binding site for residue DX4 A 401
2AC2SOFTWAREARG A:189 , ARG A:192 , TYR A:231 , HOH A:503binding site for residue SO4 A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XOY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XOY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XOY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XOY)

(-) Exons   (0, 0)

(no "Exon" information available for 4XOY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeeeeeeee....eeeeeee....eeeeeeee..hhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh.......hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xoy A   9 PEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHIcYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKIcDFGLARVADPDHDHTGFLTATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNcIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFDLPKEKLKELIFEETARFQ 353
                                    18        28        38        48      ||63        73        83        93       103       113       123 |     133       143       153     | 163|      173       183|      196       206       216       226       236       246     | 256       266       276       286       296       306       316       326||     343       353
                                                                         55|                                                             125-CME                           159-CME|                183|                                                              252-CME                                                                    327|                  
                                                                          61                                                                                                    164-CME             187                                                                                                                                          335                  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XOY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XOY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XOY)

(-) Gene Ontology  (89, 89)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_RAT | P630861erk 1gol 2erk 2fys 2gph 2z7l 3c9w 3erk 3o71 3qyw 3qyz 3r63 3zu7 3zuv 4erk 4gsb 4gt3 4gva 4i5h 4n4s 4qyy 4s2z 4s30 4s31 4s32 4s33 4s34 4xne 4xoz 4xp0 4xp2 4xp3 4xrj 4xrl 5hd4 5hd7 5ke0 5u6i 5umo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XOY)