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(-) Description

Title :  MONOCLINIC CRYSTAL FORM OF THE APO-ERK2
 
Authors :  E. Pozharski, J. Zhang, P. Shapiro
Date :  27 Aug 12  (Deposition) - 12 Sep 12  (Release) - 12 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhang, E. Pozharski, P. Shapiro
Monoclinic Crystal Form Of The Apo-Erk2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAPK1, ERK2, MAPK, PRKM1
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric/Biological Unit (5, 10)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
3GOL6Ligand/IonGLYCEROL
4PGE1Ligand/IonTRIETHYLENE GLYCOL
5SO41Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:230 , TYR A:231 , LEU A:232 , ASP A:233 , HOH A:671BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWARETYR A:185 , ARG A:189 , ARG A:192 , TYR A:231 , HOH A:706 , HOH A:733BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREPRO A:91 , SER A:244 , HIS A:267 , ASN A:269 , HOH A:577 , HOH A:578BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWARELYS A:298 , ARG A:299 , ILE A:300 , GLN A:304 , HOH A:669BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWAREGLU A:94 , GLN A:95 , LYS A:97 , LEU A:263 , LEU A:265 , PRO A:266 , HOH A:533BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWAREASP A:18 , ARG A:89 , ALA A:90 , MET A:96 , LYS A:97 , ASP A:98 , HIS A:267 , HOH A:565 , HOH A:566BINDING SITE FOR RESIDUE GOL A 406
7AC7SOFTWAREHIS A:118 , LEU A:119 , ILE A:124 , LEU A:220 , ASN A:279 , ALA A:280 , HOH A:524 , HOH A:621BINDING SITE FOR RESIDUE GOL A 407
8AC8SOFTWAREALA A:50 , LYS A:52 , GLN A:103 , ASP A:104 , LEU A:105 , MET A:106BINDING SITE FOR RESIDUE PGE A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GSB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:20 -Pro A:21

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GSB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GSB)

(-) Exons   (0, 0)

(no "Exon" information available for 4GSB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4gsba_ A: MAP kinase Erk2                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..ee......eeeeeeee...eeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh................hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gsb A   9 PEMVRGQVFDVGPRYTNLSYIGEGMVCSAYDNLNKVRVAIKKISPFEHQTYcQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPGY 356
                                    18        28  ||    41        51        61 |      71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     
                                                 31|                          63-CSO                                                                                         159-CME                                                                                                                                                                                                 
                                                  35
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GSB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GSB)

(-) Gene Ontology  (89, 89)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_RAT | P63086: 1erk 1gol 2erk 2fys 2gph 2z7l 3c9w 3erk 3o71 3qyw 3qyz 3r63 3zu7 3zuv 4erk 4gt3 4gva 4i5h 4n4s 4qyy 4s2z 4s30 4s31 4s32 4s33 4s34 4xne 4xoy 4xoz 4xp0 4xp2 4xp3 4xrj 4xrl 5hd4 5hd7 5ke0 5u6i 5umo

(-) Related Entries Specified in the PDB File

4gt3 4gva