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(-)Asym./Biol. Unit
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(-) Description

Title :  STRUCTURE OF HUMAN TFIID-IIA BOUND TO CORE PROMOTER DNA
 
Authors :  R. K. Louder, Y. He, J. R. Lopez-Blanco, J. Fang, P. Chacon, E. Nogales
Date :  29 Jan 16  (Deposition) - 06 Apr 16  (Release) - 13 Apr 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  8.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Tfiid, Tfiia, Transcription, Rna Polymerase Ii, General Transcription Factors, Preinitiation Complex, Core Promoter, Dna Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. K. Louder, Y. He, J. R. Lopez-Blanco, J. Fang, P. Chacon, E. Nogales
Structure Of Promoter-Bound Tfiid And Model Of Human Pre- Initiation Complex Assembly.
Nature V. 531 604 2016
PubMed-ID: 27007846  |  Reference-DOI: 10.1038/NATURE17394

(-) Compounds

Molecule 1 - TATA-BOX-BINDING PROTEIN
    Chains: A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TATA SEQUENCE-BINDING PROTEIN, TATA-BINDING FACTOR, TATA-BOX FACTOR, TRANSCRIPTION INITIATION FACTOR TFIID TBP SUBUNIT
 
Molecule 2 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1
    Cell Line: HELA
    Chains: B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GENERAL TRANSCRIPTION FACTOR IIA SUBUNIT 1, TFIIAL, TRANSCRIPTION INITIATION FACTOR TFIIA 42 KDA SUBUNIT, TFIIA-42
 
Molecule 3 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1
    Cell Line: HELA
    Chains: C
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GENERAL TRANSCRIPTION FACTOR IIA SUBUNIT 1, TFIIAL, TRANSCRIPTION INITIATION FACTOR TFIIA 42 KDA SUBUNIT, TFIIA-42
 
Molecule 4 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
    Cell Line: HELA
    Chains: D
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GENERAL TRANSCRIPTION FACTOR IIA SUBUNIT 2, TFIIA P12 SUBUNIT, TFIIAS, TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN, TFIIA- GAMMA
 
Molecule 5 - SUPER CORE PROMOTER
    Cell Line: HELA
    Chains: E
    Fragment: NONTEMPLATE STRAND
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: A COMPOSITE SEQUENCE COMBINING SEVERAL PROMOTER MOTIFS FROM HUMANS A
 
Molecule 6 - SUPER CORE PROMOTER
    Cell Line: HELA
    Chains: F
    Fragment: TEMPLATE STRAND
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: A COMPOSITE SEQUENCE COMBINING SEVERAL PROMOTER MOTIFS FROM HUMANS A
 
Molecule 7 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1
    Cell Line: HELA
    Chains: G
    EC Number: 2.3.1.48, 2.7.11.1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL CYCLE GENE 1 PROTEIN, TBP-ASSOCIATED FACTOR 250 KDA, P250, TRANSCRIPTION INITIATION FACTOR TFIID 250 KDA SUBUNIT, TAFII250
 
Molecule 8 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7
    Cell Line: HELA
    Chains: H
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RNA POLYMERASE II TBP-ASSOCIATED FACTOR SUBUNIT F, TRANSCRIPTION INITIATION FACTOR TFIID 55 KDA SUBUNIT, TAFII55
 
Molecule 9 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2
    Cell Line: HELA
    Chains: I
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 150 KDA COFACTOR OF INITIATOR FUNCTION, RNA POLYMERASE II TBP-ASSOCIATED FACTOR SUBUNIT B, TBP-ASSOCIATED FACTOR 150 KDA, TRANSCRIPTION INITIATION FACTOR TFIID 150 KDA SUBUNIT, TAFII150
 
Molecule 10 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6
    Cell Line: HELA
    Chains: J, K
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RNA POLYMERASE II TBP-ASSOCIATED FACTOR SUBUNIT E, TRANSCRIPTION INITIATION FACTOR TFIID 70 KDA SUBUNIT, TAFII70, TRANSCRIPTION INITIATION FACTOR TFIID 80 KDA SUBUNIT, TAFII80
 
Molecule 11 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8
    Cell Line: HELA
    Chains: L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN TAUBE NUSS, TBP-ASSOCIATED FACTOR 43 KDA, TBP- ASSOCIATED FACTOR 8, TRANSCRIPTION INITIATION FACTOR TFIID 43 KDA SUBUNIT, HTAFII43

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
2TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (0, 0)

(no "Site" information available for 5FUR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FUR)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Glu A:206 -Pro A:207
2Lys A:297 -Pro A:298
3Gln G:621 -Pro G:622
4Ser G:678 -Gly G:679
5Arg G:842 -Pro G:843
6Cys I:732 -Pro I:733

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FUR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FUR)

(-) Exons   (0, 0)

(no "Exon" information available for 5FUR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeee......hhhhhhh.............eeeee....eeeee....eeeee....hhhhhhhhhhhhhhhhh.............eeeeeee......hhhhhhh..............eeeee....eeeee....eeeeeee..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5fur A  159 SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT  338
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338


Chain B from PDB  Type:PROTEIN  Length:43
                                                                            
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                5fur B    9 TVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLM   51
                                    18        28        38        48   


Chain C from PDB  Type:PROTEIN  Length:47
                                                                                
               SCOP domains ----------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeee..eeeeeee.eeeee..eeeee.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                5fur C  330 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW  376
                                   339       349       359       369       


Chain D from PDB  Type:PROTEIN  Length:97
                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeee.eeee....eeee.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                5fur D    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACD   99
                                    12        22        32        42        52        62        72        82        92       


Chain E from PDB  Type:DNA  Length:80
                                                                                                                 
                5fur E    1 AGGGCGCCTATAAAAGGGGGTGGGGGCGCGTTCGTCCTCAGTCGCGATCGAACACTCGAGCCGAGCAGACGTGCCTACGG   80
                                    10        20        30        40        50        60        70        80


Chain F from PDB  Type:DNA  Length:80
                                                                                                                 
                5fur F   81 CCGTAGGCACGTCTGCTCGGCTCGAGTGTTCGATCGCGACTGAGGACGAACGCGCCCCCACCCCCTTTTATAGGCGCCCT  160
                                    90       100       110       120       130       140       150       160


Chain G from PDB  Type:PROTEIN  Length:406
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhh............hhhhh.............hhh......eee.hhhhhhhhhhhhhhhh............hhhh.....eeeeeee.............eeeeeeee................eeee..............eeeeee....eeeeeeee....eeeeeee..eeeee...eeeee..............hhhhhhhhhhhhhhhhhhhhh......eeehhhhhhh.....hhhhhhhhh..eeee.......eeee........hhhhhhh..hhhhhhhhhhhhhhhhhhh....hhh....hhhhh.hhhhhhhhhhhh..............................hhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fur G  609 IIQHSIPAVELRQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYGEKSFKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKSVAEHQERYKEECQRIFDLQNKVLSSTEVLstDTD 1109
                                   618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928||     951       961       971       981       991||    1083      1093      1103 ||   
                                                                                                                                                                                                                                                                                                                                                          929|                                              992|                          1105-SEP
                                                                                                                                                                                                                                                                                                                                                           943                                              1075                           1106-TPO


Chain H from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhh..hhhhhheeeee.....eeeeee..eeeeeeeee....eeeeee....eeeeeeee.eeeeee..................hhh..hhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                5fur H   11 ELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPKKFIWNHGITLPLKNVRKRRFRKTAKK  154
                                    20        30        40        50        60        70        80        90       100     ||131       141       151   
                                                                                                                         106|                          
                                                                                                                          128                          


Chain I from PDB  Type:PROTEIN  Length:914
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhh...eeeeeeee........eeee.....eeeeeee............eeee..............eeeeeeee.......eeee.hhh.........eeee......hhh............eeeeeeeee...eeee......eee.....eeeeeee......hhh..eeee...........eeeee.........hhhhhhhhhhhhhhhhh........eeeee..............eee..eee...........hhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhh.....hhh.hhhhhhhhhhhh................................hhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...eeee...eeee.......hhhhhhhhhhh.....hhhhhhhh......eeeeeeeee....eeeeeeeee..............eeee......eee......eeeeee................hhhh...hhhhhhh......eeee.hhh....eeee...hhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhh.....hhh.hhhhhhhhh.................hhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...hhhh.............hhhhhhhhhhh...............hhhhhhhhh.............hhhhhhh......hhhhhhhhhhhhhhh.....hhhhhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhh...........hhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fur I   27 KLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYSMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYF  976
                                    36        46        56        66        76        86 ||    132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972    
                                                                                        88|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                                        125                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   


Chain J from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fur J  217 SVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLA  436
                                   226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436


Chain K from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5fur K  213 IHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGP  410
                                   222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402        


Chain L from PDB  Type:PROTEIN  Length:27
                                                            
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                5fur L  172 YQVLREKAASQRRDVERALTRFMAKTG  198
                                   181       191
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FUR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FUR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FUR)

(-) Gene Ontology  (93, 201)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg G:842 - Pro G:843   [ RasMol ]  
    Cys I:732 - Pro I:733   [ RasMol ]  
    Gln G:621 - Pro G:622   [ RasMol ]  
    Glu A:206 - Pro A:207   [ RasMol ]  
    Lys A:297 - Pro A:298   [ RasMol ]  
    Ser G:678 - Gly G:679   [ RasMol ]  
 

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 Databases and Analysis Tools

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  5fur
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
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    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
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    Structure Classification: CATH | Dali | SCOP
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Access by UniProt ID/Accession number
  T2AG_HUMAN | P52657
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TAF1_HUMAN | P21675
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  TAF2_HUMAN | Q6P1X5
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    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TAF6_HUMAN | P49848
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TAF7_HUMAN | Q15545
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TAF8_HUMAN | Q7Z7C8
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TBP_HUMAN | P20226
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  TF2AA_HUMAN | P52655
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  2.3.1.48
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
  2.7.11.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Age Related Information: GenAge

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  T2AG_HUMAN | P52657
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TAF1_HUMAN | P21675
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TAF2_HUMAN | Q6P1X5
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  TAF6_HUMAN | P49848
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  TAF7_HUMAN | Q15545
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TAF8_HUMAN | Q7Z7C8
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  TBP_HUMAN | P20226
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  TF2AA_HUMAN | P52655
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        T2AG_HUMAN | P52657: 1nvp 5iy6 5iy7 5iy8 5iy9 5iya 5iyb 5iyc 5iyd
        TAF1_HUMAN | P21675: 1eqf 3aad 3uv4 3uv5 4rgw 4yym 4yyn 5i1q 5i29 5mg2
        TAF7_HUMAN | Q15545: 4rgw
        TAF8_HUMAN | Q7Z7C8: 4wv4 4wv6
        TBP_HUMAN | P20226: 1c9b 1cdw 1jfi 1nvp 1tgh 4roc 4rod 4roe 5iy6 5iy7 5iy8 5iy9 5iya 5iyb 5iyc 5iyd 5n9g
        TF2AA_HUMAN | P52655: 1nvp 5iy6 5iy7 5iy8 5iy9 5iya 5iyb 5iyc 5iyd

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FUR)