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(-) Description

Title :  TAF1(2) BOUND TO A PYRROLOPYRIDONE COMPOUND
 
Authors :  Y. Tang, F. Poy, S. F. Bellon
Date :  08 Feb 16  (Deposition) - 08 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.21
Chains :  Asym./Biol. Unit :  A
Keywords :  Taf1(2), Second Bromodomain Of Taf1, Inhibitor-Bound, Protein Binding-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. D. Crawford, V. Tsui, E. M. Flynn, S. Wang, A. M. Taylor, A. Cote, J. E. Audia, M. H. Beresini, D. J. Burdick, R. Cummings, L. A. Dakin, M. Duplessis, A. C. Good, M. C. Hewitt, H. R. Huang, H. Jayaram, J. R. Kiefer, Y. Jiang, J. Murray, C. G. Nasveschuk, E. Pardo, F. Poy, F. A. Romero, Y. Tang, J. Wang, Z. Xu, L. E. Zawadzke, X. Zhu, B. K. Albrecht, S. R. Magnuson, S. Bellon, A. G. Cochran
Diving Into The Water: Inducible Binding Conformations For Brd4, Taf1(2), Brd9, And Cecr2 Bromodomains.
J. Med. Chem. V. 59 5391 2016
PubMed-ID: 27219867  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00264
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PRSF
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SECOND BROMODOMAIN (UNP RESIDUES 1497-1638)
    Gene: TAF1, BA2R, CCG1, CCGS, TAF2A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL CYCLE GENE 1 PROTEIN, TBP-ASSOCIATED FACTOR 250 KDA, P250, TRANSCRIPTION INITIATION FACTOR TFIID 250 KDA SUBUNIT, TAFII250

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
167B1Ligand/IonN,N-DIMETHYL-3-(6-METHYL-7-OXO-6,7-DIHYDRO-1H-PYRROLO[2,3-C]PYRIDIN-4-YL)BENZAMIDE
2CA1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:1526 , PRO A:1527 , VAL A:1532 , ASN A:1533 , PHE A:1536 , VAL A:1537 , TYR A:1582 , ASN A:1583 , TYR A:1589 , TYR A:1601 , HOH A:1832binding site for residue 67B A 1701
2AC2SOFTWAREGLU A:1632 , ASP A:1635 , MET A:1637 , HOH A:1920 , HOH A:1948 , HOH A:1968binding site for residue CA A 1702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I29)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I29)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I29)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I29)

(-) Exons   (0, 0)

(no "Exon" information available for 5I29)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......hhhhh.........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i29 A 1500 DDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMT 1638
                                  1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609      1619      1629
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I29)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I29)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I29)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  TAF1_HUMAN | P21675
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAF1_HUMAN | P21675: 1eqf 3aad 3uv4 3uv5 4rgw 4yym 4yyn 5fur 5i1q 5mg2

(-) Related Entries Specified in the PDB File

5i1q