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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN BRPF1 BROMODOMAIN IN COMPLEX WITH SEED9
 
Authors :  J. Zhu, A. Caflisch
Date :  05 Nov 15  (Deposition) - 08 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Bromodomain And Phd Finger-Containing Protein 1(Brpf1), Monocytic Leukemia Zinc-Finger (Moz), Inhibitor, Transcription, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhu, A. Caflisch
Twenty Crystal Structures Of Bromodomain And Phd Finger Containing Protein 1 (Brpf1)/Ligand Complexes Reveal Conserved Binding Motifs And Rare Interactions.
J. Med. Chem. V. 59 5555 2016
PubMed-ID: 27167503  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00215

(-) Compounds

Molecule 1 - PEREGRIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 626-740
    Gene: BRPF1, BR140
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1,PROTEIN BR140

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
15Q02Ligand/IonQUINOLIN-5-OL
2NO32Ligand/IonNITRATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:652 , VAL A:657 , PRO A:658 , TYR A:707 , ASN A:708 , PHE A:714 , 5Q0 A:802 , HOH A:913 , HOH A:928binding site for residue 5Q0 A 801
2AC2SOFTWAREMET A:626 , ILE A:652 , VAL A:657 , VAL A:662 , ASN A:708 , PHE A:714 , 5Q0 A:801 , HOH A:913 , HOH A:928binding site for residue 5Q0 A 802
3AC3SOFTWARESER A:702 , LEU A:705 , LYS A:706 , TYR A:715 , VAL A:719 , ARG A:722 , HOH A:985binding site for residue NO3 A 803
4AC4SOFTWAREGLY A:650 , ILE A:652 , ASN A:689 , ALA A:717 , ARG A:720 , HOH A:922 , HOH A:1047binding site for residue NO3 A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EM3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EM3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EM3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EM3)

(-) Exons   (0, 0)

(no "Exon" information available for 5EM3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5em3 A 625 SMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKM 739
                                   634       644       654       664       674       684       694       704       714       724       734
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EM3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EM3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EM3)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRPF1_HUMAN | P55201: 2d9e 2rs9 2x35 2x4w 2x4x 2x4y 3l42 3mo8 4lc2 4qyd 4qyl 4uye 5c6s 5c7n 5c85 5c87 5c89 5d7x 5dy7 5dya 5dyc 5e3d 5e3g 5epr 5eps 5eq1 5erc 5etb 5etd 5ev9 5eva 5ewc 5ewd 5ewh 5ewv 5eww 5ffv 5ffw 5ffy 5fg4 5fg5 5g4r 5g4s 5t4u 5t4v

(-) Related Entries Specified in the PDB File

5e3g