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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN BRPF1 IN COMPLEX WITH NI-48 LIGAND
 
Authors :  C. Tallant, N. Igoe, E. D. Bayle, G. Nunez-Alonso, J. A. Newman, S. Mathe P. Savitsky, O. Fedorov, P. E. Brennan, S. Muller, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, P. Fish, S. Knapp, Structu Genomics Consortium (Sgc)
Date :  30 Aug 16  (Deposition) - 08 Feb 17  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Igoe, E. D. Bayle, O. Fedorov, C. Tallant, P. Savitsky, C. Rogers, D. R. Owen, G. Deb, T. C. Somervaille, D. M. Andrews, N. Jones, A. Cheasty, H. Ryder, P. E. Brennan, S. Muller, S. Knapp, P. V. Fish
Design Of A Biased Potent Small Molecule Inhibitor Of The Bromodomain And Phd Finger-Containing (Brpf) Proteins Suitable For Cellular And In Vivo Studies.
J. Med. Chem. V. 60 668 2017
PubMed-ID: 28068087  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01583

(-) Compounds

Molecule 1 - PEREGRIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BRPF1, BR140
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1,PROTEIN BR140

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2FMT1Ligand/IonFORMIC ACID
3N481Ligand/Ion4-CYANO-N-(7-METHOXY-1,4-DIMETHYL-2-OXO-1,2-DIHYDROQUINOLIN-6-YL)BENZENE-1-SULFONAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:638 , LYS A:639 , GLU A:642 , VAL A:657 , PRO A:658 , GLU A:661 , CYS A:704 , ASN A:708 , PHE A:714 , HOH A:908 , HOH A:950binding site for residue N48 A 801
2AC2SOFTWARELYS A:706 , TYR A:707 , ALA A:709 , LYS A:710 , HOH A:956binding site for residue EDO A 802
3AC3SOFTWAREGLN A:680 , ARG A:686binding site for residue FMT A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T4V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T4V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T4V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T4V)

(-) Exons   (0, 0)

(no "Exon" information available for 5T4V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 5t4v A 628 MQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKM 739
                                   637       647       657       667       677       687       697       707       717       727       737
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T4V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T4V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T4V)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t4v
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  BRPF1_HUMAN | P55201
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRPF1_HUMAN | P55201: 2d9e 2rs9 2x35 2x4w 2x4x 2x4y 3l42 3mo8 4lc2 4qyd 4qyl 4uye 5c6s 5c7n 5c85 5c87 5c89 5d7x 5dy7 5dya 5dyc 5e3d 5e3g 5em3 5epr 5eps 5eq1 5erc 5etb 5etd 5ev9 5eva 5ewc 5ewd 5ewh 5ewv 5eww 5ffv 5ffw 5ffy 5fg4 5fg5 5g4r 5g4s 5t4u

(-) Related Entries Specified in the PDB File

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