3L42 - JenaLib

Title :   PWWP DOMAIN OF HUMAN BROMODOMAIN AND PHD FINGER CONTAINING PROTEIN 1

Authors :   W. Tempel, H. Zeng, S. Ni, M. F. Amaya, A. Dong, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, J. Min, H. Wu, Structura Genomics Consortium (Sgc)

Date :   18 Dec 09 (Deposition) - 12 Jan 10 (Release) - 20 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym./Biol. Unit : A

Keywords :   Transcription Regulation, Histone H3 Acetylation, Chromatin Modification, Structural Genomics, Structural Genomics Consortium, Sgc, Activator, Bromodomain, Chromatin Regulator, Dna-Binding, Metal-Binding, Nucleus, Phosphoprotein, Transcription, Zinc-Finger (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Wu, H. Zeng, R. Lam, W. Tempel, M. F. Amaya, C. Xu, L. Dombrovski, W. Qiu, Y. Wang, J. Min
Structural And Histone Binding Ability Characterizations Of Human Pwwp Domains.
Plos One V. 6 E1891 2011
PubMed-ID: 21720545 | Reference-DOI: 10.1371/JOURNAL.PONE.0018919

Compounds

Molecule 1 - PEREGRIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-MHL
	Expression System Strain	:	BL21-V2R-PRARE2
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 1079-1207
	Gene	:	BRPF1, BR140
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, BR140 PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 2)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:127
 aligned with BRPF1_HUMAN | P55201 from UniProtKB/Swiss-Prot  Length:1214

    Alignment length:127
                                  1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198       
         BRPF1_HUMAN   1079 EDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGE 1205
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----PWWP-3l42A01 A:1083-1182                                                                            ----------------------- Pfam domains
         Sec.struct. author .........eeee.......eeeeee........eee..eee...hhhhhhhhhhhhhhh...eeeeee......eeeee...eee...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------E---------------------------------------------------------------------------Q------------ SAPs(SNPs)
                    PROSITE ------PWWP  PDB: A:1085-1168 UniProt: 1085-1168                                           ------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                3l42 A 1079 EDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGE 1205
                                  1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (BRPF1_HUMAN | P55201)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0043966	histone H3 acetylation	The modification of histone H3 by the addition of an acetyl group.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:1901796	regulation of signal transduction by p53 class mediator	Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0070776	MOZ/MORF histone acetyltransferase complex	A histone acetyltransferase complex that has histone H3 acetyltransferase and coactivator activities. Subunits of the human complex include MYST3/MOZ, MYST4/MORF, ING5, EAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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