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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN BRPF1B
 
Authors :  C. Tallant, G. Nunez-Alonso, P. Savitsky, S. Picaud, P. Filippakopoul Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, S. Knapp, Structur Genomics Consortium (Sgc)
Date :  21 Jun 13  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Bromodomain And Phd Finger-Containing Protein 1, Protein Br140, Structural Genomics Consortium, Sgc, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Tallant, G. Nunez-Alonso, P. Savitsky, S. Picaud, P. Filippakopoulos, C. Von Delft, H. C. Arrowsmith, M. A. Edwards, C. Bountra, S. Knapp
Crystal Structure Of The Bromodomain Of Human Brpf1B
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PEREGRIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC28-BSA4
    Expression System StrainBL21(DE3)-R3
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 626-740
    GeneBR140, BRPF1, BRPF1B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN BR140

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2NO31Ligand/IonNITRATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:702 , LEU A:705 , LYS A:706 , TYR A:715 , ARG A:722 , HOH A:961BINDING SITE FOR RESIDUE NO3 A 801
2AC2SOFTWAREASP A:648 , THR A:649 , GLY A:650 , LEU A:688 , ASN A:689 , ARG A:720 , HOH A:916 , HOH A:933BINDING SITE FOR RESIDUE EDO A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LC2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LC2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LC2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LC2)

(-) Exons   (0, 0)

(no "Exon" information available for 4LC2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4lc2a_ A: automated matches                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4lc2 A 627 EMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG 740
                                   636       646       656       666       676       686       696       706       716       726       736    

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LC2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LC2)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRPF1_HUMAN | P552012d9e 2rs9 2x35 2x4w 2x4x 2x4y 3l42 3mo8 4qyd 4qyl 4uye 5c6s 5c7n 5c85 5c87 5c89 5d7x 5dy7 5dya 5dyc 5e3d 5e3g 5em3 5epr 5eps 5eq1 5erc 5etb 5etd 5ev9 5eva 5ewc 5ewd 5ewh 5ewv 5eww 5ffv 5ffw 5ffy 5fg4 5fg5 5g4r 5g4s 5t4u 5t4v

(-) Related Entries Specified in the PDB File

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