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(-) Description

Title :  CRYSTAL STRUCTURE OF CK2ALPHA WITH 3,4-DICHLOROPHENETHYLAMINE BOUND
 
Authors :  P. Brear, C. De Fusco, K. H. Georgiou, D. Spring, M. Hyvonen
Date :  16 Jul 15  (Deposition) - 27 Jul 16  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.68
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Ck2Alpha, Ck2A, Fragment Based Drug Discovery, High Concentration Screening, Selective Atp Competitive Inhibitors, Surface Entrophy Reduction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Brear, C. De Fusco, K. Hadje Georgiou, N. J. Francis-Newton, C. J. Stubbs, H. F. Sore, A. R. Venkitaraman, C. Abell, D. R. Spring, M. Hyvonen
Specific Inhibition Of Ck2 Alpha From An Anchor Outside The Active Site.
Chem Sci V. 7 6839 2016
PubMed-ID: 28451126  |  Reference-DOI: 10.1039/C6SC02335E

(-) Compounds

Molecule 1 - CASEIN KINASE II SUBUNIT ALPHA
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PHAT4
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-329
    Gene: CSNK2A1, CK2A1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: N-TERMINAL EXTENSION GSMDIEFDDDADDDGSGSGSGSGS
    Synonym: CK II ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
142J11Ligand/Ion2-(3,4-DICHLOROPHENYL)ETHANAMINE
2ACT3Ligand/IonACETATE ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
142J6Ligand/Ion2-(3,4-DICHLOROPHENYL)ETHANAMINE
2ACT2Ligand/IonACETATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
142J5Ligand/Ion2-(3,4-DICHLOROPHENYL)ETHANAMINE
2ACT1Ligand/IonACETATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:66 , LYS A:68 , ILE A:95 , PHE A:113 , MET A:163 , ILE A:174 , ASP A:175 , 42J A:402 , HOH A:543 , HOH A:570binding site for residue 42J A 401
02AC2SOFTWARELEU A:45 , GLY A:46 , VAL A:53 , HIS A:160 , ASN A:161 , MET A:163 , ILE A:174 , ASP A:175 , 42J A:401binding site for residue 42J A 402
03AC3SOFTWAREGLN A:36 , TYR A:39 , LEU A:41 , ILE A:69 , ASP A:103 , HOH A:667binding site for residue 42J A 403
04AC4SOFTWARELEU A:128 , TYR A:136 , ILE A:140 , PRO A:159 , VAL A:162 , ILE A:164 , MET A:221 , MET A:225 , HOH A:501binding site for residue 42J A 404
05AC5SOFTWARETYR A:255 , LEU A:265 , ASP A:266 , ASN A:270 , GLU A:282 , VAL A:285 , GLN A:290 , VAL A:293binding site for residue 42J A 405
06AC6SOFTWARETYR A:255 , ASP A:259 , ILE A:263 , GLU A:282 , ARG A:283 , VAL A:285binding site for residue 42J A 406
07AC7SOFTWAREARG A:80 , ARG A:155 , ASN A:189 , HOH A:556binding site for residue ACT A 407
08AC8SOFTWAREGLU A:86 , ARG A:89 , ALA A:98 , ILE A:100binding site for residue ACT A 408
09AC9SOFTWARELYS B:68 , ILE B:95 , PHE B:113 , MET B:163 , ILE B:174 , ASP B:175 , 42J B:402 , HOH B:501 , HOH B:557binding site for residue 42J B 401
10AD1SOFTWARELEU B:45 , GLY B:46 , VAL B:53 , ASN B:118 , HIS B:160 , ASN B:161 , MET B:163 , ILE B:174 , ASP B:175 , 42J B:401 , HOH B:501 , HOH B:515 , HOH B:674binding site for residue 42J B 402
11AD2SOFTWAREPHE B:121 , LEU B:128 , TYR B:136 , ILE B:140 , PRO B:159 , VAL B:162 , ILE B:164 , MET B:221 , MET B:225 , HOH B:514binding site for residue 42J B 403
12AD3SOFTWAREGLN B:36 , ASP B:37 , TYR B:39 , ILE B:69 , HOH B:638binding site for residue 42J B 404
13AD4SOFTWAREASN B:16 , THR B:17 , TRP B:24 , LEU B:41 , VAL B:42 , HIS B:183 , GLN B:186 , HOH B:698binding site for residue 42J B 405
14AD5SOFTWAREARG B:80 , ARG B:155 , ASN B:189 , HOH B:655binding site for residue ACT B 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CLP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:230 -Pro A:231
2Glu B:230 -Pro B:231

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CLP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CLP)

(-) Exons   (0, 0)

(no "Exon" information available for 5CLP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.........hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeehhhheeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.......hhhhhh...hhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5clp A   3 GPVPSRARVYTDVNTHRPSEYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 329
                                    12        22        32        42        52        62        72        82        92       102       112       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327  
                                                                                                                                               120|                                                                                                                                                                                                           
                                                                                                                                                126                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhh.....hhh.eeeeeeeee...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeehhhheeee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.........hhhhhh...hhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5clp B   3 GPVPSRARVYTDVNTHRPSEYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 329
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CLP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CLP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CLP)

(-) Gene Ontology  (37, 37)

Asymmetric Unit(hide GO term definitions)

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        CSK21_HUMAN | P68400: 1jwh 1na7 1pjk 2pvr 2zjw 3amy 3at2 3at3 3at4 3axw 3bqc 3c13 3fwq 3h30 3juh 3mb6 3mb7 3nga 3nsz 3owj 3owk 3owl 3pe1 3pe2 3pe4 3q04 3q9w 3q9x 3q9y 3q9z 3qa0 3r0t 3rps 3tax 3u4u 3u87 3u9c 3w8l 3war 3wik 3wil 3wow 4dgl 4fbx 4grb 4gub 4gyw 4gyy 4gz3 4ib5 4kwp 4md7 4md8 4md9 4nh1 4rll 4ub7 4uba 5b0x 5cqu 5cqw 5cs6 5csh 5csp 5csv 5ct0 5ctp 5cu0 5cu2 5cu3 5cu4 5cu6 5cvf 5cvg 5cvh 5cx9 5h8b 5h8e 5h8g 5hgv 5m44 5m4c 5m4f 5m4i 5mmf 5mmr 5mo5 5mo6 5mo7 5mo8 5mod 5moe 5moh 5mot 5mov 5mow 5mp8 5mpj 5n1v 5nqc

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