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(-) Description

Title :  CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE COMPLEXED WITH SULFATE
 
Authors :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Date :  10 Jul 15  (Deposition) - 03 Aug 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Crystal Structure Of Fox-4 Cephamycinase Complexed With Sulfate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHMTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-382
    Gene: FOX-4
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2SO44Ligand/IonSULFATE ION
3ZN8Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2SO41Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2SO43Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:39 , HOH A:524 , HOH A:796 , HOH A:816binding site for residue ZN A 401
02AC2SOFTWAREHIS A:185 , HOH A:637 , HOH A:800 , ASP B:126 , HOH B:563binding site for residue ZN A 402
03AC3SOFTWAREHIS A:147 , HOH A:798 , GLU B:84 , ACT B:407binding site for residue ZN A 403
04AC4SOFTWAREHIS A:186binding site for residue ZN A 404
05AC5SOFTWARESER A:64 , TYR A:150 , LYS A:314 , THR A:315 , GLY A:316 , SER A:317 , HOH A:544 , HOH A:634 , HOH A:728binding site for residue SO4 A 405
06AC6SOFTWAREHIS B:39 , HOH B:808 , HOH B:818binding site for residue ZN B 401
07AC7SOFTWAREASP A:126 , HIS B:185 , HOH B:656 , HOH B:775 , HOH B:802binding site for residue ZN B 402
08AC8SOFTWAREGLU A:84 , HIS B:147 , ACT B:408 , HOH B:782binding site for residue ZN B 403
09AC9SOFTWARESER B:3 , GLU B:5 , GLU B:361binding site for residue ZN B 404
10AD1SOFTWAREGLY A:183 , HIS A:185 , HOH A:546 , HOH A:752 , SER B:127 , ASP B:129 , LYS B:130 , HOH B:584binding site for residue SO4 B 405
11AD2SOFTWARESER A:127 , LYS A:130 , HOH A:749 , GLY B:183 , HIS B:185 , HOH B:536 , HOH B:748 , HOH B:757binding site for residue SO4 B 406
12AD3SOFTWAREHIS A:147 , ZN A:403 , ALA B:78 , VAL B:79 , GLU B:84 , LEU B:253 , HOH B:528 , HOH B:549binding site for residue ACT B 407
13AD4SOFTWAREALA A:78 , VAL A:79 , GLU A:84 , LEU A:253 , HOH A:705 , HIS B:147 , ZN B:403 , HOH B:592 , HOH B:782binding site for residue ACT B 408
14AD5SOFTWARESER B:64 , TYR B:150 , LYS B:314 , THR B:315 , GLY B:316 , SER B:317 , HOH B:550 , HOH B:601 , HOH B:654binding site for residue SO4 B 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CHU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:275 -Pro A:276
2Tyr B:275 -Pro B:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CHU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CHU)

(-) Exons   (0, 0)

(no "Exon" information available for 5CHU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhh.....hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeeee..eeeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5chu A   3 SGEAPLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQYSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352         


Chain B from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhh.....hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeeee..eeeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5chu B   3 SGEAPLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQYSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CHU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CHU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CHU)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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        Q9L387_ECOLX | Q9L387: 5cgs 5cgw 5cgx 5chj 5chm

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5cgs 5cgw 5cgx 5chj 5chm