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(-) Description

Title :  CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE
 
Authors :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Date :  09 Jul 15  (Deposition) - 03 Feb 16  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. T. Lefurgy, V. N. Malashkevich, J. T. Aguilan, E. Nieves, E. C. Mundorff, B. Biju, M. A. Noel, R. Toro, D. Baiwir, K. M. Papp-Wallace, S. C. Almo, J. M. Frere, G. Bou, R. A. Bonomo
Fox-4 Cephamycinase: An Analysis Of Structure And Function.
Antimicrob. Agents Chemother. 2015
PubMed-ID: 26525784  |  Reference-DOI: 10.1128/AAC.01887-15

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHMTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-382
    Gene: FOX-4
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:160 , HOH A:656 , HOH A:664binding site for residue ZN A 401
2AC2SOFTWAREHIS A:39 , HOH A:565 , HOH A:678binding site for residue ZN A 402
3AC3SOFTWAREGLU A:124 , ASP A:126 , LYS A:130 , HOH A:657binding site for residue ZN A 403
4AC4SOFTWAREHIS A:185binding site for residue ZN A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CGS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:275 -Pro A:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CGS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CGS)

(-) Exons   (0, 0)

(no "Exon" information available for 5CGS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhh.........ee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhhh..hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeeee..eeeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cgs A   6 APLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQYSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CGS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CGS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CGS)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:275 - Pro A:276   [ RasMol ]  
 

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 Related Entries

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UniProtKB/TrEMBL
        Q9L387_ECOLX | Q9L387: 5cgw 5cgx 5chj 5chm 5chu

(-) Related Entries Specified in the PDB File

5cgw 5cgx 5chj 5chm