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(-) Description

Title :  CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE COMPLEXED WITH CEPHALOTHIN BATSI (SM23)
 
Authors :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Date :  10 Jul 15  (Deposition) - 03 Aug 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.36
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Crystal Structure Of Fox-4 Cephamycinase Complexed With Batsi (Sm23)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHMTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-382
    Gene: FOX-4
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2SM22Ligand/Ion(1R)-1-(2-THIENYLACETYLAMINO)-1-(3-CARBOXYPHENYL)METHYLBORONIC ACID
3ZN10Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2SM21Ligand/Ion(1R)-1-(2-THIENYLACETYLAMINO)-1-(3-CARBOXYPHENYL)METHYLBORONIC ACID
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2SM21Ligand/Ion(1R)-1-(2-THIENYLACETYLAMINO)-1-(3-CARBOXYPHENYL)METHYLBORONIC ACID
3ZN-1Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:64 , GLN A:120 , TYR A:150 , ASN A:152 , TYR A:222 , GLY A:316 , SER A:317 , THR A:318 , GLY A:319 , HOH A:584 , HOH A:625 , HOH A:647 , HOH A:651 , HOH A:681 , HOH A:710 , HOH A:780binding site for residue SM2 A 400
02AC2SOFTWAREHIS A:160 , HOH A:635 , HOH A:818 , HOH A:829binding site for residue ZN A 401
03AC3SOFTWAREHIS A:39 , HOH A:540 , HOH A:807 , HOH A:836 , ASP B:274binding site for residue ZN A 402
04AC4SOFTWAREGLU A:124 , ASP A:126 , HIS B:147 , HOH B:776binding site for residue ZN A 403
05AC5SOFTWAREHIS A:185 , HOH A:771 , HOH A:837binding site for residue ZN A 404
06AC6SOFTWAREHIS A:160 , LEU A:217 , GLU A:220 , HOH A:537 , HOH A:741 , HOH A:839binding site for residue ZN A 405
07AC7SOFTWAREHIS B:160 , ACT B:408 , HOH B:746 , HOH B:808binding site for residue ZN B 401
08AC8SOFTWAREASP A:274 , HIS B:39 , ACT B:409 , HOH B:557binding site for residue ZN B 402
09AC9SOFTWAREHIS A:147 , GLU B:124 , ASP B:126 , ACT B:406binding site for residue ZN B 403
10AD1SOFTWAREHIS B:185 , HOH B:781 , HOH B:804binding site for residue ZN B 404
11AD2SOFTWAREHIS B:160 , LEU B:217 , GLU B:220 , HOH B:539 , HOH B:771 , HOH B:774binding site for residue ZN B 405
12AD3SOFTWARETYR A:142 , HIS A:147 , ALA A:294 , PRO A:296 , GLU B:124 , ASP B:126 , LYS B:130 , ZN B:403 , HOH B:530 , HOH B:665binding site for residue ACT B 406
13AD4SOFTWAREGLU A:361 , HIS B:186binding site for residue ACT B 407
14AD5SOFTWAREHIS B:92 , TRP B:95 , HIS B:160 , LEU B:161 , ASN B:164 , ZN B:401binding site for residue ACT B 408
15AD6SOFTWAREASP A:274 , THR B:9 , HIS B:39 , ZN B:402 , HOH B:557 , HOH B:561binding site for residue ACT B 409
16AD7SOFTWAREHIS A:186 , GLU B:361 , HOH B:725binding site for residue ACT B 410
17AD8SOFTWAREILE B:62 , GLY B:63 , VAL B:65 , SER B:66 , LYS B:67 , GLN B:120 , TYR B:150 , ASN B:152 , ALA B:221 , TYR B:222 , PHE B:292 , LYS B:314 , THR B:315 , GLY B:316 , SER B:317 , THR B:318 , GLY B:319 , HOH B:507 , HOH B:509 , HOH B:604 , HOH B:646 , HOH B:671binding site for Di-peptide SM2 B 400 and SER B 64

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CHJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:275 -Pro A:276
2Tyr B:275 -Pro B:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CHJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CHJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CHJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhh...hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeeee..eeeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5chj A   6 APLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQYSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355      


Chain B from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhhh..hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeeee..eeeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5chj B   6 APLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQYSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CHJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CHJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CHJ)

(-) Gene Ontology  (5, 5)

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        Q9L387_ECOLX | Q9L387: 5cgs 5cgw 5cgx 5chm 5chu

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5cgs 5cgw 5cgx 5chm