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(-) Description

Title :  CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE COMPLEXED WITH CEFTAZIDIME BATSI (LP06)
 
Authors :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Date :  10 Jul 15  (Deposition) - 03 Aug 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Crystal Structure Of Fox-4 Cephamycinase Complexed With Ceftazidime Batsi (Lp06)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHMTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-382
    Gene: FOX-4
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CB41Ligand/IonPINACOL[[2-AMINO-ALPHA-(1-CARBOXY-1-METHYLETHOXYIMINO)-4-THIAZOLEACETYL]AMINO]METHANEBORONATE
3NA1Ligand/IonSODIUM ION
4ZN5Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:64 , LYS A:67 , GLN A:120 , TYR A:150 , ASN A:152 , TYR A:222 , SER A:317 , GLY A:319 , HOH A:567 , HOH A:656 , HOH A:657binding site for residue CB4 A 400
2AC2SOFTWAREHIS A:160 , HOH A:569 , HOH A:671binding site for residue ZN A 401
3AC3SOFTWAREHIS A:39binding site for residue ZN A 402
4AC4SOFTWAREGLU A:124 , ASP A:126 , ACT A:407binding site for residue ZN A 403
5AC5SOFTWAREHIS A:185binding site for residue ZN A 404
6AC6SOFTWAREHIS A:255 , HOH A:524 , HOH A:681binding site for residue ZN A 405
7AC7SOFTWAREGLU A:361 , HOH A:604binding site for residue NA A 406
8AC8SOFTWAREGLU A:124 , ASP A:126 , LYS A:130 , ZN A:403binding site for residue ACT A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CHM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:275 -Pro A:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CHM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CHM)

(-) Exons   (0, 0)

(no "Exon" information available for 5CHM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhh.........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhh...hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeee....eeeeeeehhhheeeeeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5chm A   7 PLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQYSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CHM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CHM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CHM)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:275 - Pro A:276   [ RasMol ]  
 

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        Q9L387_ECOLX | Q9L387: 5cgs 5cgw 5cgx 5chj 5chu

(-) Related Entries Specified in the PDB File

5cgs 5cgw 5cgx 5chj