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(-) Description

Title :  CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE MUTANT Y150F COMPLEXED WITH CEFOXITIN
 
Authors :  V. N. Malashkevich, R. Toro, S. Lefurgy, S. C. Almo
Date :  09 Jul 15  (Deposition) - 03 Feb 16  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.21
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. T. Lefurgy, V. N. Malashkevich, J. T. Aguilan, E. Nieves, E. C. Mundorff, B. Biju, M. A. Noel, R. Toro, D. Baiwir, K. M. Papp-Wallace, S. C. Almo, J. M. Frere, G. Bou, R. A. Bonomo
Fox-4 Cephamycinase: An Analysis Of Structure And Function.
Antimicrob. Agents Chemother. 2015
PubMed-ID: 26525784  |  Reference-DOI: 10.1128/AAC.01887-15

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHMTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-382
    Gene: FOX-4
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
11S71Ligand/Ion(2R)-2-{(1S)-1-METHOXY-2-OXO-1-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-5-METHYLIDENE-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
2NA1Ligand/IonSODIUM ION
3ZN6Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:64 , LYS A:67 , LEU A:119 , GLN A:120 , PHE A:150 , ASN A:152 , ALA A:221 , TYR A:222 , PHE A:292 , GLY A:316 , SER A:317 , HOH A:708binding site for residue 1S7 A 401
2AC2SOFTWAREGLU A:5 , HIS A:39 , HOH A:764binding site for residue ZN A 402
3AC3SOFTWAREHIS A:1 , GLU A:361 , HOH A:750binding site for residue ZN A 403
4AC4SOFTWAREGLU A:124 , ASP A:126 , HOH A:786binding site for residue ZN A 404
5AC5SOFTWAREHIS A:160 , HOH A:563 , HOH A:778 , HOH A:781binding site for residue ZN A 405
6AC6SOFTWAREHIS A:185 , HOH A:773 , HOH A:775binding site for residue ZN A 406
7AC7SOFTWAREHIS A:160 , GLU A:220 , HOH A:751binding site for residue NA A 407
8AC8SOFTWAREHIS A:255 , GLU A:308 , HOH A:501 , HOH A:761 , HOH A:787binding site for residue ZN A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CGX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:275 -Pro A:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CGX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CGX)

(-) Exons   (0, 0)

(no "Exon" information available for 5CGX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeee...............ee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhh..ee.....ee......hhhhhhh.eehhhhhhhhhhhhhh...hhhhhhhhhhhheeeeee..eee....eeee...hhhhhhhhhhhhhhh..ee.eeeeeeee....eeeeeeee....eeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cgx A   0 GHMSGEAPLTATVDGIIQPMLKAYRIPGMAVAVLKDGKAHYFNYGVANRESGQRVSEQTLFEIGSVSKTLTATLGAYAAVKGGFELDDKVSQHAPWLKGSAFDGVTMAELATYSAGGLPLQFPDEVDSNDKMQTYYRSWSPVYPAGTHRQFSNPSIGLFGHLAANSLGQPFEQLMSQTLLPKLGLHHTYIQVPESAMANYAYGYSKEDKPIRATPGVLAAEAYGIKTGSADLLKFVEANMGYQGDAALKSAIALTHTGFHSVGEMTQGLGWESYDYPVTEQVLLAGNSPAVSFQANPVTRFAVPKAMGEQRLYNKTGSTGGFGAYVAFVPARGIAIVMLANRNYPIEARVKAAHAILSQLAE 361
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CGX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CGX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CGX)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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    Tyr A:275 - Pro A:276   [ RasMol ]  
 

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 Related Entries

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UniProtKB/TrEMBL
        Q9L387_ECOLX | Q9L387: 5cgs 5cgw 5chj 5chm 5chu

(-) Related Entries Specified in the PDB File

5cgs 5cgw 5chj 5chm