5C47 - JenaLib

Title :   CRYSTAL STRUCTURE OF ABBB + UDP-C-GAL (LONG SOAK) + DI

Authors :   S. Gagnon, P. Meloncelli, R. B. Zheng, O. Haji-Ghassemi, A. R. Johal, S. T. L. Lowary, S. V. Evans

Date :   17 Jun 15 (Deposition) - 23 Sep 15 (Release) - 18 Nov 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.39

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Human Abo(H) Glycosyltransferases Non-Hydrolyzable Substrate Analogs Chimeric Enzyme, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. M. Gagnon, P. J. Meloncelli, R. B. Zheng, O. Haji-Ghassemi, A. R. Johal, S. N. Borisova, T. L. Lowary, S. V. Evans
High Resolution Structures Of The Human Abo(H) Blood Group Enzymes In Complex With Donor Analogs Reveal That The Enzymes Utilize Multiple Donor Conformations To Bind Substrates In A Stepwise Manner.
J. Biol. Chem. V. 290 27040 2015
PubMed-ID: 26374898 | Reference-DOI: 10.1074/JBC.M115.682401

Compounds

Molecule 1 - HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE
	Chains	:	A
	EC Number	:	2.4.1.40, 2.4.1.37
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 64-354
	Gene	:	ABO
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- ACETYLGALACTOSAMINYLTRANSFERASE,GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-GALACTOSYLTRANSFERASE,HISTO-BLOOD GROUP A TRANSFERASE,A TRANSFERASE,HISTO-BLOOD GROUP B TRANSFERASE,B TRANSFERASE,NAGAT

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Count	Type	Full Name
1	DA8	1	Ligand/Ion	OCTYL 3-DEOXY-2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D-XYLO-HEXOPYRANOSIDE
2	MN	1	Ligand/Ion	MANGANESE (II) ION
3	PG0	1	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL
4	URM	1	Ligand/Ion	(((2S,3R,4S,5R,6R)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL)METHYL)PHOSPHONIC (((2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL)METHYL PHOSPHORIC)ANHYDRIDE

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	DA8	2	Ligand/Ion	OCTYL 3-DEOXY-2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D-XYLO-HEXOPYRANOSIDE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	PG0	2	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL
4	URM	2	Ligand/Ion	(((2S,3R,4S,5R,6R)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL)METHYL)PHOSPHONIC (((2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL)METHYL PHOSPHORIC)ANHYDRIDE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:211 , ASP A:213 , URM A:404 , HOH A:684	binding site for residue MN A 401
2	AC2	SOFTWARE	HIS A:233 , SER A:235 , PHE A:236 , THR A:245 , MET A:266 , TRP A:300 , GLU A:303 , ASP A:326 , LYS A:346 , URM A:404 , HOH A:521 , HOH A:543 , HOH A:565 , HOH A:661	binding site for residue DA8 A 402
3	AC3	SOFTWARE	LYS A:139 , VAL A:143 , HIS A:219 , HOH A:506 , HOH A:520 , HOH A:574	binding site for residue PG0 A 403
4	AC4	SOFTWARE	PHE A:121 , ALA A:122 , ILE A:123 , TYR A:126 , ARG A:188 , ASP A:211 , VAL A:212 , ASP A:213 , GLY A:267 , TRP A:300 , HIS A:301 , ASP A:302 , GLU A:303 , MN A:401 , DA8 A:402 , HOH A:507 , HOH A:531 , HOH A:548 , HOH A:633 , HOH A:648 , HOH A:660 , HOH A:684	binding site for residue URM A 404

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....................................ee.....hhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhh........eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.eeeee...eee....hhhhh..eeee........hhhhh........................eeeeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...eee.hhhh.hhhhhh.........eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c47 A  58 AIGEFMVSLPRMVYPQPKVLTPCRKDVLVVTPWLAPIVWEGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPSFYGSSREAFTYERRPQSQAYIPKDEGDFYYMGAFFGGSVQEVQRLTRACHQAMMVDQANGIEAVWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAVLRKLRFTAVPKN 347
                                    67        77        87        97       107       117       127       137       147       157       167       177||     189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339        
                                                                                                                                                  178|                                                                                                                                                                      
                                                                                                                                                   181

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5c47)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	5c47
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Description