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(-) Description

Title :  STRUCTURE OF THE BLOOD GROUP GLYCOSYLTRANSFERASE AAGLYB IN COMPLEX WITH A PYRIDINE INHIBITOR AS A NEUTRAL PYROPHOSPHATE SURROGATE
 
Authors :  J. A. Cuesta-Seijo, S. Wang, D. Lafont, S. Vidal, M. M. Palcic
Date :  24 Apr 13  (Deposition) - 11 Sep 13  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gta Superfamily, Blood Group Proteins, Glycosyltransferase, Fuc-Gal, Udp-Gal, Udp-Galnac, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Wang, J. A. Cuesta-Seijo, D. Lafont, M. M. Palcic, S. Vidal
Design Of Glycosyltransferase Inhibitors: Pyridine As A Pyrophosphate Surrogate.
Chemistry V. 19 15346 2013
PubMed-ID: 24108680  |  Reference-DOI: 10.1002/CHEM.201301871

(-) Compounds

Molecule 1 - FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE SOLUBLE FORM
    ChainsA
    EC Number2.4.1.40, 2.4.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneABO
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- ACETYLGALACTOSAMINYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-GALACTOSYLTRANSFERASE, HISTO-BLOOD GROUP A TRANSFERASE, A TRANSFERASE, HISTO-BLOOD GROUP B TRANSFERASE, B TRANSFERASE, NAGAT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1BHE1Ligand/IonOCTYL 2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D-GALACTOPYRANOSIDE
2MN1Ligand/IonMANGANESE (II) ION
3WS21Ligand/Ion6-(1-BETA-D-GALACTOPYRANOSYLOXYMETHYL)-N-(5'-DEOXYLURIDINE-5'-YL)PICOLINAMIDE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1BHE2Ligand/IonOCTYL 2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D-GALACTOPYRANOSIDE
2MN-1Ligand/IonMANGANESE (II) ION
3WS22Ligand/Ion6-(1-BETA-D-GALACTOPYRANOSYLOXYMETHYL)-N-(5'-DEOXYLURIDINE-5'-YL)PICOLINAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:213 , WS2 A:403 , HOH A:579 , HOH A:686 , HOH A:766BINDING SITE FOR RESIDUE MN A 401
2AC2SOFTWAREHIS A:233 , PHE A:236 , THR A:245 , TRP A:300 , GLU A:303 , ASP A:326 , WS2 A:403 , HOH A:591 , HOH A:684 , HOH A:686 , HOH A:694 , HOH A:767 , HOH A:773 , HOH A:775BINDING SITE FOR RESIDUE BHE A 402
3AC3SOFTWAREPHE A:121 , ALA A:122 , ILE A:123 , TYR A:126 , TRP A:181 , VAL A:184 , ARG A:188 , ASP A:211 , VAL A:212 , ASP A:213 , MN A:401 , BHE A:402 , HOH A:565 , HOH A:579 , HOH A:638 , HOH A:674 , HOH A:686 , HOH A:766BINDING SITE FOR RESIDUE WS2 A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KC2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KC2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KC2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KC2)

(-) Exons   (0, 0)

(no "Exon" information available for 4KC2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4kc2a_ A: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................ee.....hhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhh........eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...eee....hhhhh..eeee........hhhhh........................eeeeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...eee.hhhh.hhhhhh.........eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kc2 A  58 AIGEFMVSLPRMVYPQPKVLTPCRKDVLVVTPWLAPIVWEGTFNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVEILTPLFGTLHPGFYGSSREAFTYERRPQSQAYIPKDEGDFYYGGAFFGGSVQEVQRLTRACHQAMMVDQANGIEAVWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAVLRKLRFTAVPK 346
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KC2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KC2)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BGAT_HUMAN | P164421lz0 1lz7 1lzi 1lzj 1r7t 1r7u 1r7v 1r7x 1r7y 1r80 1r81 1r82 1wsz 1wt0 1wt1 1wt2 1wt3 1xz6 1zhj 1zi1 1zi3 1zi4 1zi5 1ziz 1zj0 1zj1 1zj2 1zj3 1zjo 1zjp 2a8u 2a8w 2i7b 2o1f 2o1g 2o1h 2pgv 2pgy 2rit 2rix 2riy 2riz 2rj0 2rj1 2rj4 2rj5 2rj6 2rj7 2rj8 2rj9 2y7a 3i0c 3i0d 3i0e 3i0f 3i0g 3i0h 3i0i 3i0j 3i0k 3i0l 3ioh 3ioi 3ioj 3sx3 3sx5 3sx7 3sx8 3sxa 3sxb 3sxc 3sxd 3sxe 3sxg 3u0x 3u0y 3v0l 3v0m 3v0n 3v0o 3v0p 3v0q 3zgf 3zgg 4c2s 4fqw 4fra 4frb 4frd 4fre 4frh 4frl 4frm 4fro 4frp 4frq 4gbp 4kc1 4kc4 4kxo 4y62 4y63 4y64 5bxc 5c1g 5c1h 5c1l 5c36 5c38 5c3a 5c3b 5c3d 5c47 5c48 5c49 5c4b 5c4c 5c4d 5c4e 5c4f 5c8r 5cmf 5cmg 5cmh 5cmi 5cmj 5cql 5cqm 5cqn 5cqo 5cqp 5tjk 5tjl 5tjn 5tjo

(-) Related Entries Specified in the PDB File

4kc4 STRUCTURE OF THE SAME PROTEIN WITH A RELATED SYNTHETIC INHIBITOR
4kc1 STRUCTURE OF THE SAME PROTEIN WITH A RELATED SYNTHETIC INHIBITOR