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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ANGIOTENSIN-1 CONVERTING ENZYME N-DOMAIN IN COMPLEX WITH AMYLOID-BETA 35-42
 
Authors :  G. Masuyer, K. M. Larmuth, R. G. Douglas, E. D. Sturrock, K. R. Acharya
Date :  10 Mar 15  (Deposition) - 13 Jan 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B,P,Q
Biol. Unit 1:  A,P  (1x)
Biol. Unit 2:  B,Q  (1x)
Keywords :  Hydrolase, Angiotensin-Converting Enzyme, Metalloprotease, Amyloid- Beta (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Larmuth, G. Masuyer, R. G. Douglas, E. D. Sturrock, K. R. Acharya
The Kinetic And Structural Characterisation Of Amyloid-Beta Metabolism By Human Angiotensin-1- Converting Enzyme (Ace)
Febs J. V. 283 1060 2016
PubMed-ID: 26748546  |  Reference-DOI: 10.1111/FEBS.13647

(-) Compounds

Molecule 1 - ANGIOTENSIN-CONVERTING ENZYME
    Chains: A, B
    EC Number: 3.4.15.1
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell Line: CHO K1
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Fragment: N DOMAIN, UNP RESIDUES 30-657
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: MINIMALLY GLYCOSYLATED MUTANT
    Synonym: ACE, DIPEPTIDYL CARBOXYPEPTIDASE I, KININASE II
 
Molecule 2 - AMYLOID BETA A4 PROTEIN
    Chains: P, Q
    Engineered: YES
    Fragment: UNP RESIDUES 706-713
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: ONLY DI-PEPTIDE ILE-ALA (41-42) VISIBLE IN STRUCTURE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABPQ
Biological Unit 1 (1x): A P 
Biological Unit 2 (1x):  B Q

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 27)

Asymmetric Unit (8, 27)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CL2Ligand/IonCHLORIDE ION
3FUC3Ligand/IonALPHA-L-FUCOSE
4NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
5P6G3Ligand/IonHEXAETHYLENE GLYCOL
6PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
7PG41Ligand/IonTETRAETHYLENE GLYCOL
8ZN2Ligand/IonZINC ION
Biological Unit 1 (6, 13)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CL-1Ligand/IonCHLORIDE ION
3FUC2Ligand/IonALPHA-L-FUCOSE
4NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
5P6G1Ligand/IonHEXAETHYLENE GLYCOL
6PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
7PG41Ligand/IonTETRAETHYLENE GLYCOL
8ZN-1Ligand/IonZINC ION
Biological Unit 2 (5, 10)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CL-1Ligand/IonCHLORIDE ION
3FUC1Ligand/IonALPHA-L-FUCOSE
4NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
5P6G2Ligand/IonHEXAETHYLENE GLYCOL
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
7PG4-1Ligand/IonTETRAETHYLENE GLYCOL
8ZN-1Ligand/IonZINC ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:361 , HIS A:365 , GLU A:389 , HOH A:2346 , HOH A:2347BINDING SITE FOR RESIDUE ZN A1001
02AC2SOFTWARETYR A:202 , PRO A:385 , ARG A:500BINDING SITE FOR RESIDUE CL A1002
03AC3SOFTWAREGLU A:513 , ASP A:566 , GLN A:568 , PRO A:569 , LYS A:572 , HOH A:2438BINDING SITE FOR RESIDUE PEG A1201
04AC4SOFTWAREARG A:96 , GLY A:190 , PHE A:191BINDING SITE FOR RESIDUE PEG A1202
05AC5SOFTWARETYR A:465 , HOH A:2394 , HOH A:2510 , HOH A:2511 , HOH A:2512 , ARG B:453 , TYR B:465 , LEU B:466BINDING SITE FOR RESIDUE PG4 A1203
06AC6SOFTWAREPHE A:228 , ARG A:231 , ALA A:232 , ARG A:235 , VAL A:268 , VAL A:269 , ASN A:588 , HOH A:2249 , HOH A:2513BINDING SITE FOR RESIDUE PEG A1204
07AC7SOFTWARESER A:35 , VAL A:36 , SER A:39 , TYR A:369 , ARG A:381 , HOH A:2124 , HOH A:2324 , HOH A:2331 , HOH A:2358BINDING SITE FOR RESIDUE P6G A1205
08AC8SOFTWAREHIS B:361 , HIS B:365 , GLU B:389 , HOH B:2264 , HOH B:2265BINDING SITE FOR RESIDUE ZN B1001
09AC9SOFTWARETYR B:202 , PRO B:385 , PRO B:497 , ARG B:500BINDING SITE FOR RESIDUE CL B1002
10BC1SOFTWAREHOH A:2091BINDING SITE FOR RESIDUE PEG B1200
11BC2SOFTWAREGLN A:286 , GLY A:287 , TRP A:288 , HIS A:292 , GLN B:286 , GLY B:287 , TRP B:288 , HIS B:292BINDING SITE FOR RESIDUE P6G B1201
12BC3SOFTWARELEU B:32 , SER B:39 , ALA B:334 , TYR B:369 , HOH B:2241BINDING SITE FOR RESIDUE P6G B1202
13BC4SOFTWAREASN A:45 , THR A:47 , ASN A:50 , ARG A:326BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1102 THROUGH NAG A1103 BOUND TO ASN A 45
14BC5SOFTWARETHR A:478 , ASN A:480 , THR A:482 , HOH A:2430 , ARG B:245 , GLU B:596BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1100 THROUGH FUC A1101 BOUND TO ASN A 480
15BC6SOFTWAREASN B:45 , THR B:47 , GLU B:49 , ASN B:50 , ARG B:326BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1102 THROUGH NAG B1103 BOUND TO ASN B 45
16BC7SOFTWAREGLU B:403 , ASN B:416 , GLU B:522 , PRO B:524 , GLN B:527 , HOH B:2356BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1104 THROUGH BMA B1106 BOUND TO ASN B 416
17BC8SOFTWAREARG A:245 , GLU A:596 , THR B:478 , ASN B:480 , THR B:482 , HOH B:2353 , HOH B:2355BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1100 THROUGH FUC B1101 BOUND TO ASN B 480
18BC9SOFTWAREPHE A:10 , SER A:11 , GLU A:403 , ASN A:416 , GLU A:522 , PRO A:524 , GLN A:527 , HOH A:2448BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1104 THROUGH FUC A1107

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:128 -A:136
2A:330 -A:348
3A:516 -A:528
4B:128 -B:136
5B:330 -B:348
6B:516 -B:528

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:140 -Pro A:141
2Tyr A:607 -Pro A:608
3Asp B:140 -Pro B:141
4Tyr B:607 -Pro B:608

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AMB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AMB)

(-) Exons   (0, 0)

(no "Exon" information available for 5AMB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:607
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhheee....eee..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee...........hhhhhhhhh.........hhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhh...............eeee......eeee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhee.........hhhhhh........hhhhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5amb A   1 LDPGLQPGQFSADEAGAQLFAQSYQSSAEQVLFQSVAASWAHDTNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRTLGSANLPLAKRQQYNALLSQMSRIYSTAKVCLTATCWSLDPDLTNILASSRSYAMLLFAWEGWHNAAGIPLKPLYEDFTALSNEAYKQDGFTDTGAYWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQGWQATHMFRVAEEFFTSLELSPMPPEFWEGSMLEKPADGREVVCHASAWDFYNRKDFRIKQCTRVTMDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAIGDVLALSVSTPEHLHKIGLLDRVTNDTESDINYLLKMALEKIAFLPFGYLVDQWRWGVFSGRTPPSRYNFDWWYLRTKYQGICPPVTRNETHFDAGAKFHVPNVTPYIRYFVSFVLQFQFHEALCKEAGYEGPLHQCDIYRSTKAGAKLRKVLRAGSSRPWQEVLKDMVGLDALDAQPLLKYFQLVTQWLQEQNQQNGEVLGWPEYQWHPPLPDNYPEG 610
                                    10        20        30        40        50        60        70        80        90       100       110       120       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       
                                                                                                                                                          129|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                           133                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:607
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhee......ee..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee...........hhhhhhhhh.........hhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhh...............eeee......eeee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhee.........hhhhhh........hhhhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5amb B   1 LDPGLQPGQFSADEAGAQLFAQSYQSSAEQVLFQSVAASWAHDTNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRTLGSANLPLAKRQQYNALLSQMSRIYSTAKVCLTATCWSLDPDLTNILASSRSYAMLLFAWEGWHNAAGIPLKPLYEDFTALSNEAYKQDGFTDTGAYWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQGWQATHMFRVAEEFFTSLELSPMPPEFWEGSMLEKPADGREVVCHASAWDFYNRKDFRIKQCTRVTMDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAIGDVLALSVSTPEHLHKIGLLDRVTNDTESDINYLLKMALEKIAFLPFGYLVDQWRWGVFSGRTPPSRYNFDWWYLRTKYQGICPPVTRNETHFDAGAKFHVPNVTPYIRYFVSFVLQFQFHEALCKEAGYEGPLHQCDIYRSTKAGAKLRKVLRAGSSRPWQEVLKDMVGLDALDAQPLLKYFQLVTQWLQEQNQQNGEVLGWPEYQWHPPLPDNYPEG 610
                                    10        20        30        40        50        60        70        80        90       100       110       120       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       
                                                                                                                                                          129|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                           133                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             


Chain P from PDB  Type:PROTEIN  Length:2
                                  
               SCOP domains -- SCOP domains
               CATH domains -- CATH domains
               Pfam domains -- Pfam domains
         Sec.struct. author .. Sec.struct. author
                 SAPs(SNPs) -- SAPs(SNPs)
                    PROSITE -- PROSITE
                 Transcript -- Transcript
                 5amb P  41 IA  42


Chain Q from PDB  Type:PROTEIN  Length:2
                                  
               SCOP domains -- SCOP domains
               CATH domains -- CATH domains
               Pfam domains -- Pfam domains
         Sec.struct. author .. Sec.struct. author
                 SAPs(SNPs) -- SAPs(SNPs)
                    PROSITE -- PROSITE
                 Transcript -- Transcript
                 5amb Q  41 IA  42
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AMB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AMB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AMB)

(-) Gene Ontology  (156, 166)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A4_HUMAN | P05067: 1aap 1amb 1amc 1aml 1ba4 1ba6 1bjb 1bjc 1brc 1ca0 1hz3 1iyt 1mwp 1owt 1qcm 1qwp 1qxc 1qyt 1taw 1tkn 1uo7 1uo8 1uoa 1uoi 1x11 1z0q 1ze7 1ze9 1zjd 2beg 2bom 2bp4 2fjz 2fk1 2fk2 2fk3 2fkl 2fma 2g47 2ipu 2lfm 2llm 2lmn 2lmo 2lmp 2lmq 2lnq 2loh 2lp1 2lz3 2lz4 2m4j 2m9r 2m9s 2mgt 2mj1 2mpz 2mvx 2mxu 2nao 2otk 2r0w 2wk3 2y29 2y2a 2y3j 2y3k 2y3l 3ayu 3bae 3bkj 3dxc 3dxd 3dxe 3gci 3ifl 3ifn 3ifo 3ifp 3jq5 3jql 3jti 3ktm 3l33 3l81 3moq 3mxc 3mxy 3nyj 3nyl 3ovj 3ow9 3sv1 3u0t 3umh 3umi 3umk 4hix 4jfn 4m1c 4mdr 4mvi 4mvk 4mvl 4nge 4ojf 4onf 4ong 4pqd 4pwq 4xxd 5aef 5am8 5buo 5c67 5csz 5how 5hox 5hoy 5kk3 5kna 5myo
        ACE_HUMAN | P12821: 1o86 1o8a 1uze 1uzf 2c6f 2c6n 2iul 2iux 2oc2 2xy9 2xyd 2ydm 3bkk 3bkl 3l3n 3nxq 4aph 4apj 4bxk 4bzr 4bzs 4c2n 4c2o 4c2p 4c2q 4c2r 4ca5 4ca6 4ufa 4ufb 5am8 5am9 5ama 5amc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5AMB)