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(-) Description

Title :  A RECEPTOR MOLECULE
 
Authors :  C. Gao, G. A. N. Crespi, M. A. Gorman, T. L. Nero, M. W. Parker, L. A. Miles
Date :  04 Jun 15  (Deposition) - 13 Jul 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Receptor, Dimer, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. A. Miles
Null
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMYLOID BETA A4 PROTEIN
    Cell: NEURONS
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 351-691
    Gene: APP, A4, AD1
    Organ: BRAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ABPP,APPI,APP,ALZHEIMER DISEASE AMYLOID PROTEIN,CEREBRAL VASCULAR AMYLOID PEPTIDE,CVAP,PREA4,PROTEASE NEXIN-II,PN-II
    Tissue: NEURONAL

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 18)

Asymmetric/Biological Unit (9, 18)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3GOL3Ligand/IonGLYCEROL
4IDS1Ligand/Ion2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
5MG1Ligand/IonMAGNESIUM ION
6SCN3Ligand/IonTHIOCYANATE ION
7SGN1Ligand/IonN,O6-DISULFO-GLUCOSAMINE
8SO41Ligand/IonSULFATE ION
9ZN6Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:359 , ACT A:711 , SCN A:712binding site for residue ZN A 701
02AC2SOFTWAREHIS A:327 , GLU A:368 , HOH A:833binding site for residue ZN A 702
03AC3SOFTWAREGLU A:365 , HIS A:439 , SCN A:713 , HOH A:823binding site for residue ZN A 703
04AC4SOFTWAREHIS A:313 , HIS A:382 , HIS A:432 , HOH A:839binding site for residue ZN A 704
05AC5SOFTWAREHIS A:436 , SCN A:714 , HOH A:806 , HIS B:547binding site for residue ZN A 705
06AC6SOFTWAREGLU A:387 , ARG A:394 , ASP A:429 , HIS A:458 , ASP B:541binding site for residue ZN A 706
07AC7SOFTWARESGN A:718binding site for residue CA A 707
08AC8SOFTWAREASP A:352 , ALA A:355 , HIS A:359 , ARG A:430 , LEU A:434 , ACT A:711 , SO4 A:715binding site for residue GOL A 708
09AC9SOFTWAREGLU A:387 , HIS A:458 , LEU B:540 , ASP B:541 , PRO B:545 , TRP B:546binding site for residue GOL A 709
10AD1SOFTWAREMET A:335 , TRP A:338 , GLU A:342binding site for residue GOL A 710
11AD2SOFTWAREASP A:352 , VAL A:356 , MET A:456 , ZN A:701 , GOL A:708binding site for residue ACT A 711
12AD3SOFTWAREHIS A:359 , PHE A:437 , ZN A:701binding site for residue SCN A 712
13AD4SOFTWAREGLU A:365 , LEU A:378 , VAL A:379 , HIS A:439 , ZN A:703binding site for residue SCN A 713
14AD5SOFTWAREGLN A:454 , ZN A:705binding site for residue SCN A 714
15AD6SOFTWAREGLN A:358 , HIS A:359 , GLU A:438 , GOL A:708binding site for residue SO4 A 715
16AD7SOFTWAREHIS A:436 , HOH A:839binding site for residue MG A 716
17AD8SOFTWAREARG A:411 , PRO A:412 , ARG A:413 , HIS A:414 , CA A:707binding site for Poly-Saccharide residues IDS A 717 through SGN A 718

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BUO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:408 -Pro A:409

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BUO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BUO)

(-) Exons   (0, 0)

(no "Exon" information available for 5BUO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5buo A 310 ENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKE 494
                                   319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489     


Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5buo B 538 FSLDDLQPWHSF 549
                                   547
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BUO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BUO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BUO)

(-) Gene Ontology  (111, 111)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A4_HUMAN | P05067: 1aap 1amb 1amc 1aml 1ba4 1ba6 1bjb 1bjc 1brc 1ca0 1hz3 1iyt 1mwp 1owt 1qcm 1qwp 1qxc 1qyt 1taw 1tkn 1uo7 1uo8 1uoa 1uoi 1x11 1z0q 1ze7 1ze9 1zjd 2beg 2bom 2bp4 2fjz 2fk1 2fk2 2fk3 2fkl 2fma 2g47 2ipu 2lfm 2llm 2lmn 2lmo 2lmp 2lmq 2lnq 2loh 2lp1 2lz3 2lz4 2m4j 2m9r 2m9s 2mgt 2mj1 2mpz 2mvx 2mxu 2nao 2otk 2r0w 2wk3 2y29 2y2a 2y3j 2y3k 2y3l 3ayu 3bae 3bkj 3dxc 3dxd 3dxe 3gci 3ifl 3ifn 3ifo 3ifp 3jq5 3jql 3jti 3ktm 3l33 3l81 3moq 3mxc 3mxy 3nyj 3nyl 3ovj 3ow9 3sv1 3u0t 3umh 3umi 3umk 4hix 4jfn 4m1c 4mdr 4mvi 4mvk 4mvl 4nge 4ojf 4onf 4ong 4pqd 4pwq 4xxd 5aef 5am8 5amb 5c67 5csz 5how 5hox 5hoy 5kk3 5kna 5myo

(-) Related Entries Specified in the PDB File

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