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(-) Description

Title :  THE LONGER CRYSTAL STRUCTURE OF THE GROW FACTOR LIKE DOMAIN FROM BETA AMYPOID PRECUSOR PROTEIN (APP22-126)
 
Authors :  X. Tan, W. Li, Z. Wang
Date :  02 Mar 14  (Deposition) - 08 Apr 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.33
Chains :  Asym./Biol. Unit :  A
Keywords :  Alphan And Beta, Growth Factor, Heparin Binding, Protein Binding, Alzheimer'S Disease, Death Receptor 6 Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Tan, W. Li, Z. Wang
Mapping The Interaction Betwwen App And Dr6
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMYLOID BETA A4 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: THE N-TERMINAL GFLD DOAMIN OF APP, UNP RESIDUES 22-126
    Gene: APP, A4, AD1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ABPP, APPI, APP, ALZHEIMER DISEASE AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, PROTEASE NEXIN-II, PN-II, N- APP, SOLUBLE APP-ALPHA, S-APP-ALPHA, SOLUBLE APP-BETA, S-APP-BETA, C99, BETA-AMYLOID PROTEIN 42, BETA-APP42, BETA-AMYLOID PROTEIN 40, BETA-APP40, C83, P3(42), P3(40), C80, GAMMA-SECRETASE C-TERMINAL FRAGMENT 59, AMYLOID INTRACELLULAR DOMAIN 59, AICD-59, AID(59), GAMMA-CTF(59), GAMMA-SECRETASE C-TERMINAL FRAGMENT 57, AMYLOID INTRACELLULAR DOMAIN 57, AICD-57, AID(57), GAMMA-CTF(57), GAMMA- SECRETASE C-TERMINAL FRAGMENT 50, AMYLOID INTRACELLULAR DOMAIN 50, AICD-50, AID(50), GAMMA-CTF(50), C31

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PQD)

(-) Sites  (0, 0)

(no "Site" information available for 4PQD)

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:38 -A:62
2A:73 -A:117
3A:98 -A:105

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PQD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PQD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PQD)

(-) Exons   (0, 0)

(no "Exon" information available for 4PQD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh...eee.......eee......eee..........hhhhhhhhhhhhh....eeeeee....eee..eee...eeee...eee..eeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4pqd A  22 TDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDA 126
                                    31        41        51        61        71        81        91       101       111       121
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PQD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PQD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PQD)

(-) Gene Ontology  (111, 111)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A4_HUMAN | P05067: 1aap 1amb 1amc 1aml 1ba4 1ba6 1bjb 1bjc 1brc 1ca0 1hz3 1iyt 1mwp 1owt 1qcm 1qwp 1qxc 1qyt 1taw 1tkn 1uo7 1uo8 1uoa 1uoi 1x11 1z0q 1ze7 1ze9 1zjd 2beg 2bom 2bp4 2fjz 2fk1 2fk2 2fk3 2fkl 2fma 2g47 2ipu 2lfm 2llm 2lmn 2lmo 2lmp 2lmq 2lnq 2loh 2lp1 2lz3 2lz4 2m4j 2m9r 2m9s 2mgt 2mj1 2mpz 2mvx 2mxu 2nao 2otk 2r0w 2wk3 2y29 2y2a 2y3j 2y3k 2y3l 3ayu 3bae 3bkj 3dxc 3dxd 3dxe 3gci 3ifl 3ifn 3ifo 3ifp 3jq5 3jql 3jti 3ktm 3l33 3l81 3moq 3mxc 3mxy 3nyj 3nyl 3ovj 3ow9 3sv1 3u0t 3umh 3umi 3umk 4hix 4jfn 4m1c 4mdr 4mvi 4mvk 4mvl 4nge 4ojf 4onf 4ong 4pwq 4xxd 5aef 5am8 5amb 5buo 5c67 5csz 5how 5hox 5hoy 5kk3 5kna 5myo

(-) Related Entries Specified in the PDB File

1mwp 1MWP CONTAINS APP28-123, SHORTER THAN OUR STRUCTURE (APP22- 126)