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(-) Description

Title :  ELECTRON CRYO-MICROSCOPY OF AN ABETA(1-42)AMYLOID FIBRIL
 
Authors :  M. Schmidt, A. Rohou, K. Lasker, J. K. Yadav, C. Schiene-Fischer, M. Fan N. Grigorieff
Date :  29 Aug 15  (Deposition) - 14 Oct 15  (Release) - 21 Oct 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  5.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Fibril, Alzheimer'S Disease, Amyloid Fibril, Protein Aggregation, Protein Folding, Cross-Beta, Frealix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Schmidt, A. Rohou, K. Lasker, J. K. Yadav, C. Schiene-Fischer, M. Fandrich, N. Grigorie
Peptide Dimer Structure In An Abeta(1-42) Fibril Visualized With Cryo-Em
Proc. Natl. Acad. Sci. Usa V. 112 11858 2015
PubMed-ID: 26351699  |  Reference-DOI: 10.1073/PNAS.1503455112

(-) Compounds

Molecule 1 - AMYLOID BETA A4 PROTEIN
    Chains: A, B
    Fragment: ABETA, UNP RESIDUES 630-657
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ABETA17-42
    Synthetic: YES
    Tissue: BRAIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5AEF)

(-) Sites  (0, 0)

(no "Site" information available for 5AEF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AEF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:37 -Gly A:38
2Gly B:37 -Gly B:38

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AEF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AEF)

(-) Exons   (0, 0)

(no "Exon" information available for 5AEF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .eeee..........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  5aef A 15 QKLVFFAEDVGSNKGAIIGLMVGGVVIA 42
                                    24        34        


Chain B from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .eeeee......eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  5aef B 15 QKLVFFAEDVGSNKGAIIGLMVGGVVIA 42
                                    24        34
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AEF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AEF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AEF)

(-) Gene Ontology  (111, 120)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5aef)
 
  Cis Peptide Bonds
    Gly A:37 - Gly A:38   [ RasMol ]  
    Gly B:37 - Gly B:38   [ RasMol ]  
 

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  5aef
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  A4_HUMAN | P05067
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A4_HUMAN | P05067: 1aap 1amb 1amc 1aml 1ba4 1ba6 1bjb 1bjc 1brc 1ca0 1hz3 1iyt 1mwp 1owt 1qcm 1qwp 1qxc 1qyt 1taw 1tkn 1uo7 1uo8 1uoa 1uoi 1x11 1z0q 1ze7 1ze9 1zjd 2beg 2bom 2bp4 2fjz 2fk1 2fk2 2fk3 2fkl 2fma 2g47 2ipu 2lfm 2llm 2lmn 2lmo 2lmp 2lmq 2lnq 2loh 2lp1 2lz3 2lz4 2m4j 2m9r 2m9s 2mgt 2mj1 2mpz 2mvx 2mxu 2nao 2otk 2r0w 2wk3 2y29 2y2a 2y3j 2y3k 2y3l 3ayu 3bae 3bkj 3dxc 3dxd 3dxe 3gci 3ifl 3ifn 3ifo 3ifp 3jq5 3jql 3jti 3ktm 3l33 3l81 3moq 3mxc 3mxy 3nyj 3nyl 3ovj 3ow9 3sv1 3u0t 3umh 3umi 3umk 4hix 4jfn 4m1c 4mdr 4mvi 4mvk 4mvl 4nge 4ojf 4onf 4ong 4pqd 4pwq 4xxd 5am8 5amb 5buo 5c67 5csz 5how 5hox 5hoy 5kk3 5kna 5myo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5AEF)