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(-) Description

Title :  STRUCTURE OF THE HUMAN CSF-1:CSF-1R COMPLEX
 
Authors :  J. Felix, S. De Munck, J. Elegheert, S. N. Savvides
Date :  24 Oct 14  (Deposition) - 12 Aug 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  6.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cytokine-Cytokine Receptor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Felix, S. De Munck, K. Verstraete, L. Meuris, N. Callewaert, J. Elegheert, S. N. Savvides
Structure And Assembly Mechanism Of The Signaling Complex Mediated By Human Csf-1.
Structure V. 23 1621 2015
PubMed-ID: 26235028  |  Reference-DOI: 10.1016/J.STR.2015.06.019

(-) Compounds

Molecule 1 - MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293T
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 20-504
    Gene: CSF1R, FMS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CSF-1 RECEPTOR,M-CSF-R,PROTO-ONCOGENE C-FMS
 
Molecule 2 - MACROPHAGE COLONY-STIMULATING FACTOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 33-181
    Gene: CSF1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MCSF,LANIMOSTIM

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WRM)

(-) Sites  (0, 0)

(no "Site" information available for 4WRM)

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:84
2A:127 -A:177
3A:224 -A:278
4A:419 -A:485
5B:7 -B:90
6B:31 -B:31
7B:48 -B:139
8B:102 -B:146

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:24 -Pro A:25
2Val A:208 -Pro A:209
3Tyr A:328 -Pro A:329
4Tyr A:424 -Pro A:425

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WRM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WRM)

(-) Exons   (0, 0)

(no "Exon" information available for 4WRM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeee.....eeeeee.....eee.......eeee...eeeeee...hhhhheeeeee........eeeeeeee......eee...eeeee....eee.eee.hhhhhh.eeeee.hhh.......eeee...eeee...hhhhh.eeeeeeee..eeee...eeeeee.......ee.....eeeee..eeeeeeeee....eeeeeee..ee....eeeeee..eeeeeeeeee.......eeeeeeeee...eeeeeeeeeee..eeeee.....eeeee....eeeeeeeeee....eeeeee...........eeee...eeeeeeee...hhhhheeeeeeeee..eeeeeeeeeeee...eeeeeee..eeeeeee......eeeee..eeeee...eeee.......eeee..eeeeee....ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wrm A  20 IPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDVDFQHAGNYSCVASNVQGKHSTSMFFRVVSAYLNLSSEQNLIQEVTVGEGLNLKVMVEAYPGLQGFNWTYLGPFSDHQPEKLANATTYRHTFTLSLPRLKPSEAGRYSFLARNPGGWRALTFELTLRYPPEVSVIWTFGTLLCAASGYPQPNVTWLQCLQVWDDPYPEVLSQEPFHKVTVQSLTYECRAHNSVGSGSWAF 498
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209      |221       231       241       251       261    || 272       282       292   ||  303       313       323       333       343    || 354||     367       377       387       397       407  ||   421       431  ||   453       463       483       493     
                                                                                                                                                                                                                              216|                                            266|                         296|                                               348|  355|                                                410|                434|                     471|                
                                                                                                                                                                                                                               219                                             268                          298                                                350   359                                                 415                 447                      482                


Chain B from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhhhhhh......eeeeee......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..........eeeeeehhhhhhhhhhhhhhhhhhhhhhh.hhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wrm B   2 EVSEYCSHMIGSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLKSCFTKDYKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAEC 146
                                    11        21        31        41        51        61        71        81        91   ||  105       115       125       135       145 
                                                                                                                        95|                                              
                                                                                                                        100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WRM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WRM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WRM)

(-) Gene Ontology  (94, 111)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4wrm)
 
  Sites
(no "Sites" information available for 4wrm)
 
  Cis Peptide Bonds
    Glu A:24 - Pro A:25   [ RasMol ]  
    Tyr A:328 - Pro A:329   [ RasMol ]  
    Tyr A:424 - Pro A:425   [ RasMol ]  
    Val A:208 - Pro A:209   [ RasMol ]  
 

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  4wrm
    Family and Domain Information: ProDom | SYSTERS
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  CSF1R_HUMAN | P07333
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  CSF1_HUMAN | P09603
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  2.7.10.1
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  CSF1R_HUMAN | P07333
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSF1R_HUMAN | P07333: 2i0v 2i0y 2i1m 2ogv 3bea 3dpk 3krj 3krl 3lcd 3lco 4dkd 4hw7 4liq 4r7h 4r7i 4wrl
        CSF1_HUMAN | P09603: 1hmc 3uez 3uf2 4adf 4fa8 4wrl 5lxf

(-) Related Entries Specified in the PDB File

4wrl