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(-) Description

Title :  LOW X-RAY DOSE STRUCTURE OF A NI-A NI-SOX MIXTURE OF THE D. FRUCTOSOVORANS NIFE-HYDROGENASE L122A MUTANT
 
Authors :  A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. Delacey, P. P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps
Date :  18 Jun 14  (Deposition) - 29 Oct 14  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A,B,Q,R
Biol. Unit 1:  B,R  (1x)
Biol. Unit 2:  A,Q  (1x)
Keywords :  Oxidoreductase, Nife-Site, Ni-A State, Sulfenate, Ni-Sox State, Persulfide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. De Lacey, P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps
Crystallographic Studies Of [Nife]-Hydrogenase Mutants: Towards Consensus Structures For The Elusive Unready Oxidized States.
J. Biol. Inorg. Chem. V. 20 11 2015
PubMed-ID: 25315838  |  Reference-DOI: 10.1007/S00775-014-1203-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NIFE-HYDROGENASE SMALL SUBUNIT
    Chains: A, B
    EC Number: 1.12.2.1
    Engineered: YES
    Expression System: DESULFOVIBRIO FRUCTOSOVORANS
    Expression System Taxid: 878
    Fragment: RESIDUES 50-314
    Organism Scientific: DESULFOVIBRIO FRUCTOSOVORANS
    Organism Taxid: 878
 
Molecule 2 - NIFE-HYDROGENASE LARGE SUBUNIT
    Chains: Q, R
    EC Number: 1.12.2.1
    Engineered: YES
    Expression System: DESULFOVIBRIO FRUCTOSOVORANS
    Expression System Taxid: 878
    Fragment: RESIDUES 2-549
    Mutation: YES
    Organism Scientific: DESULFOVIBRIO FRUCTOSOVORANS
    Organism Taxid: 878

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABQR
Biological Unit 1 (1x):  B R
Biological Unit 2 (1x): A Q 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (12, 35)

Asymmetric Unit (12, 35)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2CSS2Mod. Amino AcidS-MERCAPTOCYSTEINE
3CSX2Mod. Amino AcidS-OXY CYSTEINE
4F3S2Ligand/IonFE3-S4 CLUSTER
5FCO2Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
6GLY2Mod. Amino AcidGLYCINE
7GOL14Ligand/IonGLYCEROL
8H2S1Ligand/IonHYDROSULFURIC ACID
9MG2Ligand/IonMAGNESIUM ION
10NI2Ligand/IonNICKEL (II) ION
11SF44Ligand/IonIRON/SULFUR CLUSTER
12SOT1Ligand/IonMORPHOLINE-4-SULFONIC ACID
Biological Unit 1 (9, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSS1Mod. Amino AcidS-MERCAPTOCYSTEINE
3CSX1Mod. Amino AcidS-OXY CYSTEINE
4F3S1Ligand/IonFE3-S4 CLUSTER
5FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
6GLY2Mod. Amino AcidGLYCINE
7GOL10Ligand/IonGLYCEROL
8H2S1Ligand/IonHYDROSULFURIC ACID
9MG-1Ligand/IonMAGNESIUM ION
10NI-1Ligand/IonNICKEL (II) ION
11SF42Ligand/IonIRON/SULFUR CLUSTER
12SOT1Ligand/IonMORPHOLINE-4-SULFONIC ACID
Biological Unit 2 (6, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSS1Mod. Amino AcidS-MERCAPTOCYSTEINE
3CSX1Mod. Amino AcidS-OXY CYSTEINE
4F3S1Ligand/IonFE3-S4 CLUSTER
5FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
6GLY-1Mod. Amino AcidGLYCINE
7GOL4Ligand/IonGLYCEROL
8H2S-1Ligand/IonHYDROSULFURIC ACID
9MG-1Ligand/IonMAGNESIUM ION
10NI-1Ligand/IonNICKEL (II) ION
11SF42Ligand/IonIRON/SULFUR CLUSTER
12SOT-1Ligand/IonMORPHOLINE-4-SULFONIC ACID

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218BINDING SITE FOR RESIDUE SF4 A1265
02AC2SOFTWARETHR A:223 , ASN A:225 , CYS A:227 , PHE A:232 , TRP A:237 , CYS A:245 , LEU A:246 , CYS A:248 , LYS Q:225 , GLN Q:230BINDING SITE FOR RESIDUE F3S A1266
03AC3SOFTWAREGLU A:16 , CYS A:17 , CYS A:20 , GLY A:112 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG Q:70BINDING SITE FOR RESIDUE SF4 A1267
04AC4SOFTWAREASP A:82 , GLN A:85 , HOH A:2469 , HOH A:2478 , GLN B:129 , LYS B:131 , THR Q:360 , HOH Q:2794BINDING SITE FOR RESIDUE GOL A1268
05AC5SOFTWAREGLN A:62 , HOH A:2448 , HOH A:2453 , HOH A:2456 , HOH A:2541BINDING SITE FOR RESIDUE GOL A1269
06AC6SOFTWAREPHE A:193 , TYR A:214 , HOH A:2561 , HOH A:2675 , HOH A:2677 , LYS Q:410BINDING SITE FOR RESIDUE GOL A1270
07AC7SOFTWAREGLY B:107 , ILE B:108 , LYS B:140 , HOH B:2625 , HOH B:2690 , HOH B:2697BINDING SITE FOR RESIDUE GLY B 301
08AC8SOFTWAREHIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218 , PRO B:221BINDING SITE FOR RESIDUE SF4 B1265
09AC9SOFTWARETHR B:223 , ASN B:225 , CYS B:227 , PHE B:232 , TRP B:237 , CYS B:245 , LEU B:246 , CYS B:248 , LYS R:225 , GLN R:230BINDING SITE FOR RESIDUE F3S B1266
10BC1SOFTWAREGLU B:16 , CYS B:17 , CYS B:20 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70 , HIS R:228BINDING SITE FOR RESIDUE SF4 B1267
11BC2SOFTWARETYR B:214 , PRO B:221BINDING SITE FOR RESIDUE SOT B1268
12BC3SOFTWAREGLU B:205 , LYS B:209 , GOL B:1270 , GOL B:1273 , HOH B:2441 , HOH B:2651 , HOH B:2698 , ASN R:454BINDING SITE FOR RESIDUE GOL B1269
13BC4SOFTWARELYS B:209 , GOL B:1269 , HOH B:2496BINDING SITE FOR RESIDUE GOL B1270
14BC5SOFTWAREH2S B:1272 , HOH B:2444 , HOH B:2473 , HOH B:2488 , HOH B:2541 , HOH B:2553 , HOH R:3257BINDING SITE FOR RESIDUE GOL B1271
15BC6SOFTWAREHIS B:5 , ASP B:68 , GOL B:1271 , HOH B:2480 , HOH B:2488 , HOH B:2541 , GLN R:175BINDING SITE FOR RESIDUE H2S B1272
16BC7SOFTWAREGOL B:1269 , ASN R:454 , HOH R:2766 , HOH R:2815 , HOH R:2947BINDING SITE FOR RESIDUE GOL B1273
17BC8SOFTWARECSX Q:75 , VAL Q:78 , HIS Q:79 , ALA Q:474 , PRO Q:475 , ARG Q:476 , LEU Q:479 , VAL Q:497 , PRO Q:498 , SER Q:499 , CSS Q:543 , CYS Q:546 , NI Q:1551 , HOH Q:2701BINDING SITE FOR RESIDUE FCO Q1550
18BC9SOFTWARECYS Q:72 , CSX Q:75 , CSS Q:543 , CYS Q:546 , FCO Q:1550 , HOH Q:2701BINDING SITE FOR RESIDUE NI Q1551
19CC1SOFTWAREGLU Q:53 , LEU Q:495 , HIS Q:549 , HOH Q:2702 , HOH Q:2703 , HOH Q:2704BINDING SITE FOR RESIDUE MG Q1552
20CC2SOFTWAREARG Q:100 , ASN Q:104 , PHE Q:295 , ALA Q:296 , THR Q:297 , GLU Q:445 , HOH Q:2707 , HOH Q:2795 , HOH Q:2820BINDING SITE FOR RESIDUE GOL Q1553
21CC3SOFTWARELYS Q:189 , ARG Q:529BINDING SITE FOR RESIDUE CL Q1554
22CC4SOFTWAREILE R:24 , GLU R:25 , HIS R:118 , ARG R:476 , ASP R:541 , HOH R:2705 , HOH R:2706 , HOH R:2707 , HOH R:2794BINDING SITE FOR RESIDUE GLY R 601
23CC5SOFTWARECSX R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , SER R:499 , CSS R:543 , CYS R:546 , NI R:1551 , HOH R:2701BINDING SITE FOR RESIDUE FCO R1550
24CC6SOFTWARECYS R:72 , CSX R:75 , CSS R:543 , CYS R:546 , FCO R:1550 , HOH R:2701BINDING SITE FOR RESIDUE NI R1551
25CC7SOFTWAREGLU R:53 , LEU R:495 , HIS R:549 , HOH R:2702 , HOH R:2703 , HOH R:2704BINDING SITE FOR RESIDUE MG R1552
26CC8SOFTWAREARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , GLU R:445 , GOL R:1555 , HOH R:2783 , HOH R:2805BINDING SITE FOR RESIDUE GOL R1553
27CC9SOFTWARESER R:313 , ASN R:326 , LYS R:395 , GOL R:1556 , HOH R:2823 , HOH R:2984 , HOH R:2994 , HOH R:3174BINDING SITE FOR RESIDUE GOL R1554
28DC1SOFTWAREGLN R:310 , TRP R:442 , GLU R:445 , GOL R:1553 , HOH R:2990 , HOH R:3042 , HOH R:3273BINDING SITE FOR RESIDUE GOL R1555
29DC2SOFTWARELYS B:106 , HOH B:2621 , GLU R:303 , LEU R:306 , ASN R:326 , VAL R:327 , GOL R:1554 , HOH R:2776 , HOH R:3085 , HOH R:3230BINDING SITE FOR RESIDUE GOL R1556
30DC3SOFTWAREPRO R:15 , VAL R:17 , GLU R:33 , TRP R:43 , LYS R:365 , HOH R:3007 , HOH R:3248 , HOH R:3303BINDING SITE FOR RESIDUE GOL R1557
31DC4SOFTWAREVAL B:161 , LEU B:162 , GLY B:165 , GLU R:303 , LYS R:304 , HOH R:2880 , HOH R:2999BINDING SITE FOR RESIDUE GOL R1558

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Q:259 -Q:436
2R:259 -R:436

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Lys A:29 -Pro A:30
2Lys A:124 -Pro A:125
3Cys A:147 -Pro A:148
4Thr A:258 -Pro A:259
5Lys B:29 -Pro B:30
6Lys B:124 -Pro B:125
7Cys B:147 -Pro B:148
8Thr B:258 -Pro B:259
9Asp Q:19 -Pro Q:20
10Asn Q:226 -Pro Q:227
11Asp R:19 -Pro R:20
12Asn R:226 -Pro R:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UPV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UPV)

(-) Exons   (0, 0)

(no "Exon" information available for 4UPV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upv A   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  


Chain B from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh.....eeeee..ee.hhhhh..ee..eehhhhhhhhhhhh.eeeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4upv B   2 TAKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQGG 301
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261  ||
                                                                                                                                                                                                                                                                                                264|
                                                                                                                                                                                                                                                                                                 301


Chain Q from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upv Q   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHAHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPcCIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       544     
                                                                                                75-CSX                                                                                                                                                                                                                                                                                                                                                                                                                                                                             543-CSS   


Chain R from PDB  Type:PROTEIN  Length:547
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upv R   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHAHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPcCIACGVHG 601
                                    14        24        34        44        54        64        74|       84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       543     ||
                                                                                                 75-CSX                                                                                                                                                                                                                                                                                                                                                                                                                                                                             543-CSS549|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            601
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UPV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UPV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UPV)

(-) Gene Ontology  (11, 31)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E1K247_DESFR | E1K247: 4ue2 4ue6 4uql 4urh
        E1K248_DESFR | E1K248: 4ue2 4ue6 4uql 4urh
        PHNL_DESFR | P18188: 1frf 1yqw 1yrq 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4uew 4upe 4uql 4uqp 4urh
        PHNS_DESFR | P18187: 1frf 1yqw 1yrq 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4uew 4upe 4uql 4uqp 4urh
UniProtKB/TrEMBL
        E1K247_DESFR | E1K247: 4ucq 4ucw 4ud2 4ud6 4ueq 4uew
        E1K248_DESFR | E1K248: 4ucq 4ucw 4ud2 4ud6 4ueq 4uew

(-) Related Entries Specified in the PDB File

4upe STRUCTURE OF THE UNREADY NI-A STATE OF THE S499C MUTANT OF D. FRUCTOSOVORANS NIFE-HYDROGENASE
4uql HIGH-RESOLUTION STRUCTURE OF A NI-A NI-SOX MIXTURE OF THE D. FRUCTOSOVORANS NIFE-HYDROGENASE L122A MUTANT
4uqp HIGH-RESOLUTION STRUCTURE OF THE D. FRUCTOSOVORANS NIFE -HYDROGENASE L122A MUTANT AFTER EXPOSURE TO AIR
4urh HIGH-RESOLUTION STRUCTURE OF PARTIALLY OXIDIZED D. FRUCTOSOVORANS NIFE-HYDROGENASE