4UPE - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF THE UNREADY NI-A STATE OF THE S499C MUTANT OF D. FRUCTOSOVORANS NIFE-HYDROGENASE

Authors :   A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. Delacey, P. P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps

Date :   16 Jun 14 (Deposition) - 29 Oct 14 (Release) - 21 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,Q,R,S
Biol. Unit 1: A,Q  (1x)
Biol. Unit 2: B,R  (1x)
Biol. Unit 3: C,S  (1x)

Keywords :   Oxidoreductase, Nife-Site, Ni-A State, Sulfenate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. De Lacey, P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps
Crystallographic Studies Of [Nife]-Hydrogenase Mutants: Towards Consensus Structures For The Elusive Unready Oxidized States.
J. Biol. Inorg. Chem. V. 20 11 2015
PubMed-ID: 25315838 | Reference-DOI: 10.1007/S00775-014-1203-9
(for further references see the PDB file header)

Molecule 1 - NIFE-HYDROGENASE SMALL SUBUNIT
	Chains	:	A, B, C
	EC Number	:	1.12.2.1
	Engineered	:	YES
	Expression System	:	DESULFOVIBRIO FRUCTOSOVORANS
	Expression System Taxid	:	878
	Fragment	:	UNP RESIDUES 53-314
	Organism Scientific	:	DESULFOVIBRIO FRUCTOSOVORANS
	Organism Taxid	:	878

Molecule 2 - NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT
	Chains	:	Q, R, S
	EC Number	:	1.12.2.1
	Engineered	:	YES
	Expression System	:	DESULFOVIBRIO FRUCTOSOVORANS
	Expression System Taxid	:	878
	Fragment	:	UNP RESIDUES 5-549
	Mutation	:	YES
	Organism Scientific	:	DESULFOVIBRIO FRUCTOSOVORANS
	Organism Taxid	:	878
	Synonym	:	NIFE-HYDROGENASE LARGE SUBUNIT

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	Q	R	S
Biological Unit 1 (1x)	:	A			Q
Biological Unit 2 (1x)	:		B			R
Biological Unit 3 (1x)	:			C			S

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (9, 30)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	CSX	3	Mod. Amino Acid	S-OXY CYSTEINE
3	F3S	3	Ligand/Ion	FE3-S4 CLUSTER
4	FCO	3	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
5	GOL	5	Ligand/Ion	GLYCEROL
6	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7	NI	3	Ligand/Ion	NICKEL (II) ION
8	PO4	2	Ligand/Ion	PHOSPHATE ION
9	SF4	6	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 1 (6, 8)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CSX	1	Mod. Amino Acid	S-OXY CYSTEINE
3	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
4	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
5	GOL	2	Ligand/Ion	GLYCEROL
6	MES	-1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7	NI	-1	Ligand/Ion	NICKEL (II) ION
8	PO4	1	Ligand/Ion	PHOSPHATE ION
9	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 2 (6, 8)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CSX	1	Mod. Amino Acid	S-OXY CYSTEINE
3	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
4	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
5	GOL	2	Ligand/Ion	GLYCEROL
6	MES	-1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7	NI	-1	Ligand/Ion	NICKEL (II) ION
8	PO4	1	Ligand/Ion	PHOSPHATE ION
9	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 3 (6, 7)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CSX	1	Mod. Amino Acid	S-OXY CYSTEINE
3	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
4	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
5	GOL	1	Ligand/Ion	GLYCEROL
6	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7	NI	-1	Ligand/Ion	NICKEL (II) ION
8	PO4	-1	Ligand/Ion	PHOSPHATE ION
9	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218	BINDING SITE FOR RESIDUE SF4 A1265
02	AC2	SOFTWARE	THR A:223 , ASN A:225 , CYS A:227 , PHE A:232 , TRP A:237 , CYS A:245 , LEU A:246 , CYS A:248 , GLN Q:230	BINDING SITE FOR RESIDUE F3S A1266
03	AC3	SOFTWARE	CYS A:17 , CYS A:20 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG Q:70	BINDING SITE FOR RESIDUE SF4 A1267
04	AC4	SOFTWARE	HIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218 , PRO B:221	BINDING SITE FOR RESIDUE SF4 B1265
05	AC5	SOFTWARE	ASN B:225 , CYS B:227 , PHE B:232 , TRP B:237 , CYS B:245 , LEU B:246 , CYS B:248 , LYS R:225 , GLN R:230	BINDING SITE FOR RESIDUE F3S B1266
06	AC6	SOFTWARE	CYS B:17 , CYS B:20 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70	BINDING SITE FOR RESIDUE SF4 B1267
07	AC7	SOFTWARE	HIS C:184 , CYS C:187 , ARG C:189 , LEU C:190 , CYS C:212 , LEU C:213 , CYS C:218	BINDING SITE FOR RESIDUE SF4 C1265
08	AC8	SOFTWARE	ASN C:225 , CYS C:227 , PHE C:232 , TRP C:237 , CYS C:245 , LEU C:246 , CYS C:248 , LYS S:225 , GLN S:230	BINDING SITE FOR RESIDUE F3S C1266
09	AC9	SOFTWARE	CYS C:17 , CYS C:20 , THR C:113 , CYS C:114 , GLY C:146 , CYS C:147 , PRO C:148 , ARG S:70 , HIS S:228	BINDING SITE FOR RESIDUE SF4 C1267
10	BC1	SOFTWARE	CSX Q:75 , VAL Q:78 , HIS Q:79 , ALA Q:474 , PRO Q:475 , ARG Q:476 , LEU Q:479 , VAL Q:497 , PRO Q:498 , CYS Q:499 , CYS Q:546 , NI Q:1551 , HOH Q:2001	BINDING SITE FOR RESIDUE FCO Q1550
11	BC2	SOFTWARE	CYS Q:72 , CSX Q:75 , CYS Q:543 , CYS Q:546 , FCO Q:1550 , HOH Q:2001	BINDING SITE FOR RESIDUE NI Q1551
12	BC3	SOFTWARE	GLU Q:53 , LEU Q:495 , HIS Q:549 , HOH Q:2002 , HOH Q:2003 , HOH Q:2004	BINDING SITE FOR RESIDUE CA Q1552
13	BC4	SOFTWARE	ARG Q:100 , ASN Q:104 , PHE Q:295 , ALA Q:296 , GLU Q:445 , HOH Q:2050 , HOH Q:2091 , HOH Q:2157	BINDING SITE FOR RESIDUE GOL Q1561
14	BC5	SOFTWARE	ALA A:55 , PHE C:198 , HOH C:2155 , ASN Q:181 , ALA Q:182 , TYR Q:183 , LEU Q:185 , ARG Q:529 , HOH Q:2391	BINDING SITE FOR RESIDUE GOL Q1562
15	BC6	SOFTWARE	GLU Q:465 , SER Q:466 , LYS Q:467 , ARG Q:484 , HOH Q:2427	BINDING SITE FOR RESIDUE PO4 Q1564
16	BC7	SOFTWARE	CSX R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , CYS R:499 , CYS R:546 , NI R:1551 , HOH R:2001	BINDING SITE FOR RESIDUE FCO R1550
17	BC8	SOFTWARE	CYS R:72 , CSX R:75 , CYS R:543 , CYS R:546 , FCO R:1550 , HOH R:2001	BINDING SITE FOR RESIDUE NI R1551
18	BC9	SOFTWARE	GLU R:53 , LEU R:495 , HIS R:549 , HOH R:2002 , HOH R:2003 , HOH R:2004	BINDING SITE FOR RESIDUE CA R1552
19	CC1	SOFTWARE	ARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , GLU R:445 , HOH R:2054 , HOH R:2094 , HOH R:2161	BINDING SITE FOR RESIDUE GOL R1561
20	CC2	SOFTWARE	ALA B:55 , ASN R:181 , ALA R:182 , TYR R:183 , LEU R:185 , ARG R:529 , HOH R:2343	BINDING SITE FOR RESIDUE GOL R1562
21	CC3	SOFTWARE	ALA C:103 , LYS C:104 , SER R:466 , LYS R:467 , ARG R:484 , HOH R:2367	BINDING SITE FOR RESIDUE PO4 R1563
22	CC4	SOFTWARE	ASN R:181 , HOH R:2113 , HOH R:2212 , HOH R:2343	BINDING SITE FOR RESIDUE CA R1564
23	CC5	SOFTWARE	CSX S:75 , VAL S:78 , HIS S:79 , ALA S:474 , PRO S:475 , ARG S:476 , LEU S:479 , VAL S:497 , PRO S:498 , CYS S:499 , CYS S:546 , NI S:1551 , HOH S:2001	BINDING SITE FOR RESIDUE FCO S1550
24	CC6	SOFTWARE	CYS S:72 , CSX S:75 , CYS S:543 , CYS S:546 , FCO S:1550 , HOH S:2001	BINDING SITE FOR RESIDUE NI S1551
25	CC7	SOFTWARE	GLU S:53 , LEU S:495 , HIS S:549 , HOH S:2002 , HOH S:2003 , HOH S:2004	BINDING SITE FOR RESIDUE CA S1552
26	CC8	SOFTWARE	ARG S:100 , ASN S:104 , PHE S:295 , ALA S:296 , THR S:297 , GLU S:445 , HOH S:2050 , HOH S:2087 , HOH S:2154	BINDING SITE FOR RESIDUE GOL S1561
27	CC9	SOFTWARE	SER R:156 , GLY S:450 , ALA S:451 , LYS S:452 , ASP S:453 , ASN S:454 , HOH S:2335 , HOH S:2376 , HOH S:2389	BINDING SITE FOR RESIDUE MES S1562

Asymmetric Unit

No.	Residues
1	Q:72	-	Q:543
2	Q:259	-	Q:436
3	R:72	-	R:543
4	R:259	-	R:436
5	S:72	-	S:543
6	S:259	-	S:436

Asymmetric Unit

No.	Residues
1	Lys A:29	-	Pro A:30
2	Lys A:124	-	Pro A:125
3	Cys A:147	-	Pro A:148
4	Thr A:258	-	Pro A:259
5	Lys B:29	-	Pro B:30
6	Lys B:124	-	Pro B:125
7	Cys B:147	-	Pro B:148
8	Thr B:258	-	Pro B:259
9	Lys C:29	-	Pro C:30
10	Lys C:124	-	Pro C:125
11	Cys C:147	-	Pro C:148
12	Thr C:258	-	Pro C:259
13	Lys Q:5	-	Pro Q:6
14	Asp Q:19	-	Pro Q:20
15	Asn Q:226	-	Pro Q:227
16	Asp R:19	-	Pro R:20
17	Asn R:226	-	Pro R:227
18	Asp S:19	-	Pro S:20
19	Asn S:226	-	Pro S:227

(no "SAP(SNP)/Variant" information available for 4UPE)

(no "PROSITE Motif" information available for 4UPE)

(no "Exon" information available for 4UPE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upe A   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upe B   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain C from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upe C   4 KHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263

Chain Q from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upe Q   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPCTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74|       84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
                                                                                                 75-CSX

Chain R from PDB  Type:PROTEIN  Length:544
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upe R   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPCTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    
                                                                                                75-CSX

Chain S from PDB  Type:PROTEIN  Length:544
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upe S   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPCTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    
                                                                                                75-CSX

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UPE)

(no "CATH Domain" information available for 4UPE)

(no "Pfam Domain" information available for 4UPE)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CSX	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		F3S	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FCO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		MES	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SF4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
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		CC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn Q:226 - Pro Q:227	[ RasMol ]
		Asn R:226 - Pro R:227	[ RasMol ]
		Asn S:226 - Pro S:227	[ RasMol ]
		Asp Q:19 - Pro Q:20	[ RasMol ]
		Asp R:19 - Pro R:20	[ RasMol ]
		Asp S:19 - Pro S:20	[ RasMol ]
		Cys A:147 - Pro A:148	[ RasMol ]
		Cys B:147 - Pro B:148	[ RasMol ]
		Cys C:147 - Pro C:148	[ RasMol ]
		Lys A:124 - Pro A:125	[ RasMol ]
		Lys A:29 - Pro A:30	[ RasMol ]
		Lys B:124 - Pro B:125	[ RasMol ]
		Lys B:29 - Pro B:30	[ RasMol ]
		Lys C:124 - Pro C:125	[ RasMol ]
		Lys C:29 - Pro C:30	[ RasMol ]
		Lys Q:5 - Pro Q:6	[ RasMol ]
		Thr A:258 - Pro A:259	[ RasMol ]
		Thr B:258 - Pro B:259	[ RasMol ]
		Thr C:258 - Pro C:259	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
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	4upe
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
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	PHNS_DESFR \| P18187
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Access by Enzyme Classificator (EC Number)
	1.12.2.1
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4upv	LOW X-RAY DOSE STRUCTURE OF A NI-A NI-SOX MIXTURE OF THE D. FRUCTOSOVORANS NIFE-HYDROGENASE L122A MUTANT
4uql	HIGH-RESOLUTION STRUCTURE OF A NI-A NI-SOX MIXTURE OF THE D. FRUCTOSOVORANS NIFE-HYDROGENASE L122A MUTANT
4uqp	HIGH-RESOLUTION STRUCTURE OF THE D. FRUCTOSOVORANS NIFE- HYDROGENASE L122A MUTANT AFTER EXPOSURE TO AIR
4urh	HIGH-RESOLUTION STRUCTURE OF PARTIALLY OXIDIZED D. FRUCTOSOVORANS NIFE-HYDROGENASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 30)

Sites (27, 27)

SS Bonds (6, 6)

Cis Peptide Bonds (19, 19)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 17)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File