4URH - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   HIGH-RESOLUTION STRUCTURE OF PARTIALLY OXIDIZED D. FRUCTOSOVORANS NIFE-HYDROGENASE

Authors :   A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. Delacey, P. P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps

Date :   30 Jun 14 (Deposition) - 29 Oct 14 (Release) - 21 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.44

Chains :   Asym. Unit : A,B,C,Q,R,S
Biol. Unit 1: C,S  (1x)
Biol. Unit 2: A,Q  (1x)
Biol. Unit 3: B,R  (1x)

Keywords :   Oxidoreductase, Nife-Site, Ni-Su State, Sulfenate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. De Lacey, P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps
Crystallographic Studies Of [Nife]-Hydrogenase Mutants: Towards Consensus Structures For The Elusive Unready Oxidized States.
J. Biol. Inorg. Chem. V. 20 11 2015
PubMed-ID: 25315838 | Reference-DOI: 10.1007/S00775-014-1203-9
(for further references see the PDB file header)

Molecule 1 - HYDROGENASE (NIFE) SMALL SUBUNIT HYDA
	Chains	:	A, B, C
	EC Number	:	1.12.2.1
	Engineered	:	YES
	Expression System	:	DESULFOVIBRIO FRUCTOSOVORANS
	Expression System Taxid	:	878
	Organism Scientific	:	DESULFOVIBRIO FRUCTOSOVORANS
	Organism Taxid	:	878
	Synonym	:	NIFE-HYDROGENASE SMALL SUBUNIT

Molecule 2 - NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT
	Chains	:	Q, R, S
	EC Number	:	1.12.2.1
	Engineered	:	YES
	Expression System	:	DESULFOVIBRIO FRUCTOSOVORANS
	Expression System Taxid	:	878
	Organism Scientific	:	DESULFOVIBRIO FRUCTOSOVORANS
	Organism Taxid	:	878
	Synonym	:	NIFE-HYDROGENASE LARGE SUBUNIT

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	Q	R	S
Biological Unit 1 (1x)	:			C			S
Biological Unit 2 (1x)	:	A			Q
Biological Unit 3 (1x)	:		B			R

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 27)

No.	Name	Count	Type	Full Name
1	CSX	3	Mod. Amino Acid	S-OXY CYSTEINE
2	F3S	3	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	3	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	5	Ligand/Ion	GLYCEROL
5	MG	4	Ligand/Ion	MAGNESIUM ION
6	NI	3	Ligand/Ion	NICKEL (II) ION
7	SF4	6	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 1 (5, 6)

No.	Name	Count	Type	Full Name
1	CSX	1	Mod. Amino Acid	S-OXY CYSTEINE
2	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	1	Ligand/Ion	GLYCEROL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	NI	-1	Ligand/Ion	NICKEL (II) ION
7	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 2 (5, 8)

No.	Name	Count	Type	Full Name
1	CSX	1	Mod. Amino Acid	S-OXY CYSTEINE
2	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	3	Ligand/Ion	GLYCEROL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	NI	-1	Ligand/Ion	NICKEL (II) ION
7	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 3 (5, 6)

No.	Name	Count	Type	Full Name
1	CSX	1	Mod. Amino Acid	S-OXY CYSTEINE
2	F3S	1	Ligand/Ion	FE3-S4 CLUSTER
3	FCO	1	Ligand/Ion	CARBONMONOXIDE-(DICYANO) IRON
4	GOL	1	Ligand/Ion	GLYCEROL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	NI	-1	Ligand/Ion	NICKEL (II) ION
7	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218	BINDING SITE FOR RESIDUE SF4 A1265
02	AC2	SOFTWARE	THR A:223 , ASN A:225 , CYS A:227 , PHE A:232 , TRP A:237 , CYS A:245 , LEU A:246 , CYS A:248 , GLN Q:230	BINDING SITE FOR RESIDUE F3S A1266
03	AC3	SOFTWARE	GLU A:16 , CYS A:17 , CYS A:20 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG Q:70 , HIS Q:228	BINDING SITE FOR RESIDUE SF4 A1267
04	AC4	SOFTWARE	SER A:134 , VAL A:139 , LYS A:140 , THR A:141 , ASN A:172 , GLY A:173 , GOL A:1269 , HOH A:2256	BINDING SITE FOR RESIDUE GOL A1268
05	AC5	SOFTWARE	LYS A:140 , LEU A:169 , ASP A:170 , GOL A:1268	BINDING SITE FOR RESIDUE GOL A1269
06	AC6	SOFTWARE	HIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218	BINDING SITE FOR RESIDUE SF4 B1265
07	AC7	SOFTWARE	ASN B:225 , CYS B:227 , PHE B:232 , CYS B:245 , LEU B:246 , CYS B:248 , LYS R:225 , GLN R:230	BINDING SITE FOR RESIDUE F3S B1266
08	AC8	SOFTWARE	GLU B:16 , CYS B:17 , CYS B:20 , GLY B:112 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG R:70 , HIS R:228	BINDING SITE FOR RESIDUE SF4 B1267
09	AC9	SOFTWARE	HIS C:184 , CYS C:187 , ARG C:189 , LEU C:190 , CYS C:212 , LEU C:213 , CYS C:218	BINDING SITE FOR RESIDUE SF4 C1265
10	BC1	SOFTWARE	THR C:223 , ASN C:225 , CYS C:227 , PHE C:232 , TRP C:237 , CYS C:245 , LEU C:246 , CYS C:248 , LYS S:225 , GLN S:230	BINDING SITE FOR RESIDUE F3S C1266
11	BC2	SOFTWARE	GLU C:16 , CYS C:17 , CYS C:20 , THR C:113 , CYS C:114 , GLY C:146 , CYS C:147 , PRO C:148 , ARG S:70 , HIS S:228	BINDING SITE FOR RESIDUE SF4 C1267
12	BC3	SOFTWARE	CSX Q:75 , VAL Q:78 , HIS Q:79 , ALA Q:474 , PRO Q:475 , ARG Q:476 , LEU Q:479 , VAL Q:497 , PRO Q:498 , SER Q:499 , CYS Q:546 , NI Q:1551 , HOH Q:2066	BINDING SITE FOR RESIDUE FCO Q1550
13	BC4	SOFTWARE	CYS Q:72 , CSX Q:75 , CYS Q:543 , CYS Q:546 , FCO Q:1550 , HOH Q:2066	BINDING SITE FOR RESIDUE NI Q1551
14	BC5	SOFTWARE	GLU Q:53 , LEU Q:495 , HIS Q:549 , HOH Q:2047 , HOH Q:2048 , HOH Q:2279	BINDING SITE FOR RESIDUE MG Q1552
15	BC6	SOFTWARE	ARG Q:100 , ASN Q:104 , PHE Q:295 , ALA Q:296 , THR Q:297 , TRP Q:442 , GLU Q:445 , HOH Q:2105 , HOH Q:2251 , HOH Q:2389	BINDING SITE FOR RESIDUE GOL Q1553
16	BC7	SOFTWARE	HOH A:2082 , HOH A:2083 , HOH C:2168 , HOH C:2172 , HOH C:2186 , ASN Q:181 , HOH Q:2171	BINDING SITE FOR RESIDUE MG Q1554
17	BC8	SOFTWARE	CSX R:75 , VAL R:78 , HIS R:79 , ALA R:474 , PRO R:475 , ARG R:476 , LEU R:479 , VAL R:497 , PRO R:498 , SER R:499 , CYS R:546 , NI R:1551 , HOH R:2053	BINDING SITE FOR RESIDUE FCO R1550
18	BC9	SOFTWARE	CYS R:72 , CSX R:75 , CYS R:543 , CYS R:546 , FCO R:1550 , HOH R:2053	BINDING SITE FOR RESIDUE NI R1551
19	CC1	SOFTWARE	GLU R:53 , LEU R:495 , HIS R:549 , HOH R:2039 , HOH R:2040 , HOH R:2203	BINDING SITE FOR RESIDUE MG R1552
20	CC2	SOFTWARE	ARG R:100 , ASN R:104 , PHE R:295 , ALA R:296 , THR R:297 , GLU R:445 , HOH R:2069 , HOH R:2179 , HOH R:2303	BINDING SITE FOR RESIDUE GOL R1553
21	CC3	SOFTWARE	CSX S:75 , VAL S:78 , HIS S:79 , ALA S:474 , PRO S:475 , ARG S:476 , LEU S:479 , VAL S:497 , PRO S:498 , SER S:499 , CYS S:546 , NI S:1551 , HOH S:2047	BINDING SITE FOR RESIDUE FCO S1550
22	CC4	SOFTWARE	CYS S:72 , CSX S:75 , CYS S:543 , CYS S:546 , FCO S:1550 , HOH S:2047	BINDING SITE FOR RESIDUE NI S1551
23	CC5	SOFTWARE	GLU S:53 , LEU S:495 , HIS S:549 , HOH S:2031 , HOH S:2032 , HOH S:2193	BINDING SITE FOR RESIDUE MG S1552
24	CC6	SOFTWARE	ARG S:100 , ASN S:104 , PHE S:295 , ALA S:296 , THR S:297 , TRP S:442 , GLU S:445 , HOH S:2073 , HOH S:2171 , HOH S:2281	BINDING SITE FOR RESIDUE GOL S1553

Asymmetric Unit

No.	Residues
1	Q:259	-	Q:436
2	R:259	-	R:436
3	S:259	-	S:436

Asymmetric Unit

No.	Residues
1	Lys A:29	-	Pro A:30
2	Lys A:124	-	Pro A:125
3	Cys A:147	-	Pro A:148
4	Thr A:258	-	Pro A:259
5	Lys B:29	-	Pro B:30
6	Lys B:124	-	Pro B:125
7	Cys B:147	-	Pro B:148
8	Thr B:258	-	Pro B:259
9	Lys C:29	-	Pro C:30
10	Lys C:124	-	Pro C:125
11	Cys C:147	-	Pro C:148
12	Thr C:258	-	Pro C:259
13	Asp Q:19	-	Pro Q:20
14	Asn Q:226	-	Pro Q:227
15	Asp R:19	-	Pro R:20
16	Asn R:226	-	Pro R:227
17	Asp S:19	-	Pro S:20
18	Asn S:226	-	Pro S:227

(no "SAP(SNP)/Variant" information available for 4URH)

(no "PROSITE Motif" information available for 4URH)

(no "Exon" information available for 4URH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urh A   2 TAKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh.....eeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urh B   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain C from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh.....eeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4urh C   1 LTAKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain Q from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urh Q   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKNPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74|       84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
                                                                                                 75-CSX

Chain R from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urh R   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKNPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74|       84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
                                                                                                 75-CSX

Chain S from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urh S   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVcTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKNPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74|       84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
                                                                                                 75-CSX

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4URH)

(no "CATH Domain" information available for 4URH)

(no "Pfam Domain" information available for 4URH)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
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		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn Q:226 - Pro Q:227	[ RasMol ]
		Asn R:226 - Pro R:227	[ RasMol ]
		Asn S:226 - Pro S:227	[ RasMol ]
		Asp Q:19 - Pro Q:20	[ RasMol ]
		Asp R:19 - Pro R:20	[ RasMol ]
		Asp S:19 - Pro S:20	[ RasMol ]
		Cys A:147 - Pro A:148	[ RasMol ]
		Cys B:147 - Pro B:148	[ RasMol ]
		Cys C:147 - Pro C:148	[ RasMol ]
		Lys A:124 - Pro A:125	[ RasMol ]
		Lys A:29 - Pro A:30	[ RasMol ]
		Lys B:124 - Pro B:125	[ RasMol ]
		Lys B:29 - Pro B:30	[ RasMol ]
		Lys C:124 - Pro C:125	[ RasMol ]
		Lys C:29 - Pro C:30	[ RasMol ]
		Thr A:258 - Pro A:259	[ RasMol ]
		Thr B:258 - Pro B:259	[ RasMol ]
		Thr C:258 - Pro C:259	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4urh
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	PHNL_DESFR \| P18188
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	PHNS_DESFR \| P18187
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		Protein-protein Interaction	:	DIP
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	1.12.2.1
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Access by UniProt ID/Accession number
	E1K247_DESFR \| E1K247
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	E1K248_DESFR \| E1K248
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PHNL_DESFR \| P18188
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	PHNS_DESFR \| P18187
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	E1K247_DESFR \| E1K247	:	4ue2 4ue6 4upv 4uql
	E1K248_DESFR \| E1K248	:	4ue2 4ue6 4upv 4uql
	PHNL_DESFR \| P18188	:	1frf 1yqw 1yrq 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4uew 4upe 4upv 4uql 4uqp
	PHNS_DESFR \| P18187	:	1frf 1yqw 1yrq 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4uew 4upe 4upv 4uql 4uqp
UniProtKB/TrEMBL
	E1K247_DESFR \| E1K247	:	4ucq 4ucw 4ud2 4ud6 4ueq 4uew
	E1K248_DESFR \| E1K248	:	4ucq 4ucw 4ud2 4ud6 4ueq 4uew

4uql	HIGH-RESOLUTION STRUCTURE OF A NI-A NI-SOX MIXTURE OF THE D. FRUCTOSOVORANS NIFE-HYDROGENASE L122A MUTANT
4uqp	HIGH-RESOLUTION STRUCTURE OF THE D. FRUCTOSOVORANS NIFE -HYDROGENASE L122A MUTANT AFTER EXPOSURE TO AIR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 27)

Sites (24, 24)

SS Bonds (3, 3)

Cis Peptide Bonds (18, 18)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 31)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File