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4UM8
Asym. Unit
Info
Asym.Unit (632 KB)
Biol.Unit 1 (309 KB)
Biol.Unit 2 (312 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA V BETA 6
Authors
:
X. Dong, T. A. Springer
Date
:
15 May 14 (Deposition) - 12 Nov 14 (Release) - 17 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Immune System, Cell Surface Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Dong, N. E. Hudson, C. Lu, T. A. Springer
Structural Determinants Of Integrin Beta-Subunit Specificity For Latent Tgf-Beta
Nat. Struct. Mol. Biol. V. 21 1091 2014
[
close entry info
]
Hetero Components
(9, 77)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
3a: CACODYLATE ION (CACa)
3b: CACODYLATE ION (CACb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
3i: CALCIUM ION (CAi)
3j: CALCIUM ION (CAj)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
5h: ALPHA-D-MANNOSE (MANh)
5i: ALPHA-D-MANNOSE (MANi)
5j: ALPHA-D-MANNOSE (MANj)
5k: ALPHA-D-MANNOSE (MANk)
5l: ALPHA-D-MANNOSE (MANl)
5m: ALPHA-D-MANNOSE (MANm)
5n: ALPHA-D-MANNOSE (MANn)
5o: ALPHA-D-MANNOSE (MANo)
5p: ALPHA-D-MANNOSE (MANp)
5q: ALPHA-D-MANNOSE (MANq)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
7ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
7ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
7v: N-ACETYL-D-GLUCOSAMINE (NAGv)
7w: N-ACETYL-D-GLUCOSAMINE (NAGw)
7x: N-ACETYL-D-GLUCOSAMINE (NAGx)
7y: N-ACETYL-D-GLUCOSAMINE (NAGy)
7z: N-ACETYL-D-GLUCOSAMINE (NAGz)
8a: NICKEL (II) ION (NIa)
9a: SULFATE ION (SO4a)
9b: SULFATE ION (SO4b)
9c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
10
Ligand/Ion
BETA-D-MANNOSE
2
CA
10
Ligand/Ion
CALCIUM ION
3
CAC
2
Ligand/Ion
CACODYLATE ION
4
CL
3
Ligand/Ion
CHLORIDE ION
5
MAN
17
Ligand/Ion
ALPHA-D-MANNOSE
6
MG
2
Ligand/Ion
MAGNESIUM ION
7
NAG
29
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
NI
1
Ligand/Ion
NICKEL (II) ION
9
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238 , HOH A:4027
BINDING SITE FOR RESIDUE CA A2001
02
AC2
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292 , HOH A:4034
BINDING SITE FOR RESIDUE CA A2002
03
AC3
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357
BINDING SITE FOR RESIDUE CA A2003
04
AC4
SOFTWARE
ASP A:413 , ASP A:415 , ASN A:417 , TYR A:419 , ASP A:421
BINDING SITE FOR RESIDUE CA A2004
05
AC5
SOFTWARE
ASP B:123 , SER B:125 , GLU B:223 , ASP B:254
BINDING SITE FOR RESIDUE MG B2001
06
AC6
SOFTWARE
SER B:127 , ASP B:130 , ASP B:131 , LYS B:338
BINDING SITE FOR RESIDUE CA B2003
07
AC7
SOFTWARE
ASP C:415 , ASN C:417 , TYR C:419 , ASP C:421 , HOH C:4029
BINDING SITE FOR RESIDUE CA C2001
08
AC8
SOFTWARE
ASP C:349 , ASP C:351 , ASP C:353 , PHE C:355 , ASP C:357
BINDING SITE FOR RESIDUE CA C2002
09
AC9
SOFTWARE
ASP C:230 , ASN C:232 , ASP C:234 , ILE C:236 , ASP C:238 , ASP C:257 , HOH C:4010
BINDING SITE FOR RESIDUE CA C2003
10
BC1
SOFTWARE
ASP C:284 , ASN C:286 , ASP C:288 , TYR C:290 , ASP C:292
BINDING SITE FOR RESIDUE CA C2004
11
BC2
SOFTWARE
ASP D:123 , SER D:125 , GLU D:223 , ASP D:254 , HOH D:4003
BINDING SITE FOR RESIDUE MG D2001
12
BC3
SOFTWARE
SER D:127 , ASP D:130 , ASP D:131 , LYS D:338
BINDING SITE FOR RESIDUE CA D2003
13
BC4
SOFTWARE
SER C:528 , LEU C:532
BINDING SITE FOR RESIDUE CL C1595
14
BC5
SOFTWARE
ASN A:77 , SER A:90
BINDING SITE FOR RESIDUE CL A1595
15
BC6
SOFTWARE
ASN C:77 , SER C:90
BINDING SITE FOR RESIDUE CL C1596
16
BC7
SOFTWARE
PRO A:488 , ARG A:489
BINDING SITE FOR RESIDUE SO4 A1596
17
BC8
SOFTWARE
PHE A:337 , LYS A:369 , HOH A:4037 , PRO B:271
BINDING SITE FOR RESIDUE SO4 A1597
18
BC9
SOFTWARE
GLY A:418 , GLY A:485
BINDING SITE FOR RESIDUE SO4 A1598
19
CC1
SOFTWARE
HIS A:591 , HIS C:591
BINDING SITE FOR RESIDUE NI A1599
20
CC2
SOFTWARE
PRO D:89 , LEU D:92 , LEU D:104 , GLN D:105
BINDING SITE FOR RESIDUE CAC D1442
21
CC3
SOFTWARE
VAL B:65 , THR B:103 , LEU B:104 , GLN B:105
BINDING SITE FOR RESIDUE CAC B1442
22
CC4
SOFTWARE
GLU A:15 , GLY A:16 , SER A:17 , LYS A:42 , ASN A:44 , GLU A:52
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3044 THROUGH MAN A3047 BOUND TO ASN A 44
23
CC5
SOFTWARE
ASP A:257 , LYS A:259 , ASN A:260 , TYR A:265 , GLY A:324
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3260 THROUGH MAN A3264 BOUND TO ASN A 260
24
CC6
SOFTWARE
ARG A:211 , GLN A:214 , PHE A:217 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3266 THROUGH MAN A3271 BOUND TO ASN A 266
25
CC7
SOFTWARE
ASN A:458 , THR A:460 , CYS A:461 , CYS A:472 , PHE A:473 , ASN A:474 , MAN C:3461
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3458 THROUGH BMA A3460 BOUND TO ASN A 458
26
CC8
SOFTWARE
ASN A:524 , ASP A:564 , HOH A:4065 , GLU C:10 , SER C:12 , ARG C:65 , ARG C:431 , HOH C:4027
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3524 THROUGH MAN A3528 BOUND TO ASN A 524
27
CC9
SOFTWARE
PRO A:583 , ASN A:585
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A3585 THROUGH NAG A3586 BOUND TO ASN A 585
28
DC1
SOFTWARE
ASN B:243
BINDING SITE FOR MONO-SACCHARIDE NAG B3243 BOUND TO ASN B 243
29
DC2
SOFTWARE
GLU C:15 , GLY C:16 , SER C:17 , LYS C:42 , ASN C:44
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3044 THROUGH BMA C3046 BOUND TO ASN C 44
30
DC3
SOFTWARE
ASP C:257 , LYS C:259 , ASN C:260
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3260 THROUGH NAG C3261 BOUND TO ASN C 260
31
DC4
SOFTWARE
ARG C:211 , GLN C:214 , PHE C:217 , TYR C:254 , SER C:263 , LEU C:264 , ASN C:266
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3266 THROUGH MAN C3271 BOUND TO ASN C 266
32
DC5
SOFTWARE
GLU A:448 , TYR A:450 , NAG A:3459 , BMA A:3460 , ASN C:458 , THR C:460 , CYS C:472 , ASN C:474 , HOH C:4035
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3458 THROUGH MAN C3461 BOUND TO ASN C 458
33
DC6
SOFTWARE
GLU A:10 , SER A:12 , GLY A:13 , GLU A:15 , LEU A:57 , ARG A:65 , ARG A:66 , CYS A:67 , ARG A:398 , ARG A:431 , ASN C:492 , ASN C:524
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3524 THROUGH MAN C3530 BOUND TO ASN C 524
34
DC7
SOFTWARE
GLU C:560 , PRO C:583 , ASN C:585
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C3585 THROUGH NAG C3586 BOUND TO ASN C 585
35
DC8
SOFTWARE
ASN D:80 , SER D:82 , HOH D:4021 , HOH D:4022
BINDING SITE FOR MONO-SACCHARIDE NAG D3080 BOUND TO ASN D 80
36
DC9
SOFTWARE
ASN D:243 , HOH D:4013
BINDING SITE FOR MONO-SACCHARIDE NAG D3243 BOUND TO ASN D 243
37
EC1
SOFTWARE
ASN B:212 , LYS B:214 , SER C:305 , LYS C:330 , LEU C:331 , ASN C:332 , ASN D:370 , PRO D:407 , HOH D:4023
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D3370 THROUGH MAN D3373 BOUND TO ASN D 370
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (632 KB)
Header - Asym.Unit
Biol.Unit 1 (309 KB)
Header - Biol.Unit 1
Biol.Unit 2 (312 KB)
Header - Biol.Unit 2
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