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(-) Description

Title :  DEERPOX VIRUS DPV022 IN COMPLEX WITH BIM BH3
 
Authors :  D. R. Burton, M. Kvansakul
Date :  23 Dec 14  (Deposition) - 05 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Viral Protein, Dpv022, Deerpox Virus, Apoptosis, Bcl-2, Bim Bh3 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Burton, S. Caria, B. Marshall, M. Barry, M. Kvansakul
Structural Basis Of Deerpox Virus-Mediated Inhibition Of Apoptosis.
Acta Crystallogr. , Sect. D V. 71 1593 2015
PubMed-ID: 26249341  |  Reference-DOI: 10.1107/S1399004715009402

(-) Compounds

Molecule 1 - ANTIAPOPTOTIC MEMBRANE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BCL-2, UNP RESIDUES 1-155
    Organism Scientific: MULE DEER POXVIRUS
    Organism Taxid: 304399
    Strain: W-848-83
 
Molecule 2 - BCL-2-LIKE PROTEIN 11
    Chains: B
    Fragment: BH3, UNP RESIDUES 141-166
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-11, BCL2-INTERACTING MEDIATOR OF CELL DEATH, BCL2-L-11, BCL2-INTERACTING MEDIATOR OF CELL DEATH, BIM
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UF3)

(-) Sites  (0, 0)

(no "Site" information available for 4UF3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UF3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UF3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UF3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UF3)

(-) Exons   (0, 0)

(no "Exon" information available for 4UF3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uf3 A   3 AAIEFDEIVKKLLNIYINDICTTGEKRLLNNYEKSILDRIYKSCEYIKKNYELDFNSMYNQININDITTSDIKSKIIEALLIDSRPSVKLATLSFISLIAEKWGEKNRAKIMEILSNEIVEKISNNGKDFIDFIDR 138
                                    12        22        32        42        52        62        72        82        92       102       112       122       132      


Chain B from PDB  Type:PROTEIN  Length:18
                                                  
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                 4uf3 B  56 IWIAQELRRIGDEFNAYY  73
                                    65
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UF3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UF3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UF3)

(-) Gene Ontology  (63, 66)

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  4uf3
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  Q08FF8_DPV84 | Q08FF8
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  Q08FX8_DPV83 | Q08FX8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2L11_HUMAN | O43521: 1f95 2k7w 2nl9 2v6q 2vm6 2wh6 2yq6 2yq7 3d7v 3fdl 3io8 3io9 3kj0 3kj1 3kj2 4a1u 4a1w 4b4s 4d2m 4qvf 4yj4 4zie 4zif 4zih 5agw 5agx 5c3g
        Q08FF8_DPV84 | Q08FF8: 4uf1 4uf2
UniProtKB/TrEMBL
        Q08FX8_DPV83 | Q08FX8: 4uf1 4uf2

(-) Related Entries Specified in the PDB File

4uf1 DEERPOX VIRUS DPV022 IN COMPLEX WITH BAK BH3
4uf2 DEERPOX VIRUS DPV022 IN COMPLEX WITH BAX BH3