4RYC - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   RENIN IN COMPLEXED WITH 4-METHOXY-3-(3-METHOXYPROPOXY)-N-{[(3S,4S)-4-{[(4-METHYLPHENYL)SULFONYL]AMINO}PYRROLIDIN-3-YL]METHYL}-N-(PROPAN-2-YL)BENZAMIDE INHIBITOR

Authors :   N. Ostermann

Date :   15 Dec 14 (Deposition) - 25 Mar 15 (Release) - 22 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (3x)

Keywords :   Hydrolase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Lorthiois, F. Cumin, C. Ehrhardt, T. Kosaka, H. Sellner, N. Ostermann, E. Francotte, T. Wagner, J. Maibaum
Trans-(3S, 4S)-Disubstituted Pyrrolidines As Inhibitors Of The Human Aspartyl Protease Renin. Part I: Prime Site Exploration Using An Amino Linker.
Bioorg. Med. Chem. Lett. V. 25 1782 2015
PubMed-ID: 25782742 | Reference-DOI: 10.1016/J.BMCL.2015.02.039

Molecule 1 - RENIN
	Chains	:	A, B
	EC Number	:	3.4.23.15
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Taxid	:	10029
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ANGIOTENSINOGENASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 6)

No.	Name	Count	Type	Full Name
1	3ZK	2	Ligand/Ion	4-METHOXY-3-(3-METHOXYPROPOXY)-N-{[(3S,4S)-4-{[(4-METHYLPHENYL)SULFONYL]AMINO}PYRROLIDIN-3-YL]METHYL}-N-(PROPAN-2-YL)BENZAMIDE
2	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	3ZK	1	Ligand/Ion	4-METHOXY-3-(3-METHOXYPROPOXY)-N-{[(3S,4S)-4-{[(4-METHYLPHENYL)SULFONYL]AMINO}PYRROLIDIN-3-YL]METHYL}-N-(PROPAN-2-YL)BENZAMIDE
2	DMS	-1	Ligand/Ion	DIMETHYL SULFOXIDE
3	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	3ZK	1	Ligand/Ion	4-METHOXY-3-(3-METHOXYPROPOXY)-N-{[(3S,4S)-4-{[(4-METHYLPHENYL)SULFONYL]AMINO}PYRROLIDIN-3-YL]METHYL}-N-(PROPAN-2-YL)BENZAMIDE
2	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
3	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 18)

No.	Name	Count	Type	Full Name
1	3ZK	6	Ligand/Ion	4-METHOXY-3-(3-METHOXYPROPOXY)-N-{[(3S,4S)-4-{[(4-METHYLPHENYL)SULFONYL]AMINO}PYRROLIDIN-3-YL]METHYL}-N-(PROPAN-2-YL)BENZAMIDE
2	DMS	3	Ligand/Ion	DIMETHYL SULFOXIDE
3	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:67 , MET A:100	BINDING SITE FOR RESIDUE NAG A 1000
2	AC2	SOFTWARE	THR A:12 , GLN A:13 , TYR A:14 , VAL A:30 , ASP A:32 , GLY A:34 , TYR A:75 , SER A:76 , THR A:77 , PRO A:111 , LEU A:114 , ALA A:115 , VAL A:120 , GLN A:128 , LEU A:213 , ASP A:215 , THR A:216 , GLY A:217 , ALA A:218 , SER A:219 , ILE A:291 , THR A:295	BINDING SITE FOR RESIDUE 3ZK A 1001
3	AC3	SOFTWARE	ASP A:11 , ALA A:272 , ASP A:273 , TYR A:274 , VAL A:275 , PHE A:276 , ALA A:285 , ARG A:307 , HOH A:1119	BINDING SITE FOR RESIDUE SO4 A 1002
4	AC4	SOFTWARE	ASN B:67 , MET B:100	BINDING SITE FOR RESIDUE NAG B 1000
5	AC5	SOFTWARE	THR B:12 , GLN B:13 , TYR B:14 , VAL B:30 , ASP B:32 , GLY B:34 , TYR B:75 , SER B:76 , THR B:77 , PRO B:111 , LEU B:114 , ALA B:115 , VAL B:120 , GLN B:128 , LEU B:213 , ASP B:215 , THR B:216 , GLY B:217 , ALA B:218 , SER B:219 , ILE B:291 , THR B:295 , DMS B:1002	BINDING SITE FOR RESIDUE 3ZK B 1001
6	AC6	SOFTWARE	GLN B:13 , SER B:219 , 3ZK B:1001	BINDING SITE FOR RESIDUE DMS B 1002

Asymmetric Unit

No.	Residues
1	A:45	-	A:50
2	A:206	-	A:210
3	A:249	-	A:282
4	B:45	-	B:50
5	B:206	-	B:210
6	B:249	-	B:282

Asymmetric Unit

No.	Residues
1	Thr A:22	-	Pro A:23
2	Leu A:110	-	Pro A:111
3	Pro A:293	-	Pro A:294
4	Gly A:296	-	Pro A:297
5	Thr B:22	-	Pro B:23
6	Leu B:110	-	Pro B:111
7	Pro B:293	-	Pro B:294
8	Gly B:296	-	Pro B:297

(no "SAP(SNP)/Variant" information available for 4RYC)

(no "PROSITE Motif" information available for 4RYC)

(no "Exon" information available for 4RYC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeee...eeeeeeee....eeeeeeee.....eeee.......hhhhhh....hhhhh...eeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeee.hhhhhh.....eeee..hhhhhhhhh.hhhhhhhhh......eeeeee........eeeee...hhh.eeeeeeeee.......eeeeeeeee..eeee....eeeee......eeehhhhhhhhhhhhh.ee....eeee.hhh.....eeeee...eeeehhhhhh.........eee..eee..........eeehhhhhhheeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ryc A   -4 TLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  326
                                     5        15        25        35        45  ||    53        63        73        83        93   ||  104       114       124       134       144       154     ||163       173       183       193       203       213       223       233       244       254       264       274      281C|      290       300       310       320      
                                                                              47A|                                                97|                                                         160C|                                                                               242|                                  281A|||                                             
                                                                               47B                                                 99                                                          160D                                                                                244                                   281B||                                             
                                                                                                                                                                                                                                                                                                                          281C|                                             
                                                                                                                                                                                                                                                                                                                           281D

Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeee...eeeeeeee....eeeeeeee.....eeee.......hhhhhh....hhhhh...eeeeeeeeee....eeeeeeeeeeeee..eeeeeeeeeeee.hhhhhh.....eeee..hhhhhhhhh.hhhhhhhhh......eeeeee........eeeee...hhh.eeeeeeeee.......eeee.eeee..eeee....eeeee......eeehhhhhhhhhhhhh.ee....eeee..hhhhh..eeeee..eeeeehhhhhh.........eee..eee..........eeehhhhhhheeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ryc B   -4 TLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  326
                                     5        15        25        35        45  ||    53        63        73        83        93   ||  104       114       124       134       144       154     ||163       173       183       193       203       213       223       233       244       254       264       274      281C|      290       300       310       320      
                                                                              47A|                                                97|                                                         160C|                                                                               242|                                  281A|||                                             
                                                                               47B                                                 99                                                          160D                                                                                244                                   281B||                                             
                                                                                                                                                                                                                                                                                                                          281C|                                             
                                                                                                                                                                                                                                                                                                                           281D

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4RYC)

(no "CATH Domain" information available for 4RYC)

(no "Pfam Domain" information available for 4RYC)

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	Cis Peptide Bonds
		Gly A:296 - Pro A:297	[ RasMol ]
		Gly B:296 - Pro B:297	[ RasMol ]
		Leu A:110 - Pro A:111	[ RasMol ]
		Leu B:110 - Pro B:111	[ RasMol ]
		Pro A:293 - Pro A:294	[ RasMol ]
		Pro B:293 - Pro B:294	[ RasMol ]
		Thr A:22 - Pro A:23	[ RasMol ]
		Thr B:22 - Pro B:23	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

SS Bonds (6, 6)

Cis Peptide Bonds (8, 8)

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