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Title :   CRYSTAL STRUCTURE OF RENIN IN COMPLEX WITH NVP-BCH965 (COMPOUND 9)

Authors :   N. Ostermann, F. Zink, M. Kroemer

Date :   09 Aug 12 (Deposition) - 13 Feb 13 (Release) - 10 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Renin Inhibitor, Fragment Based Screening, 3, 5-Disubstituted Piperidines, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Ostermann, S. Ruedisser, C. Ehrhardt, W. Breitenstein, A. Marzinzik, E. Jacoby, E. Vangrevelinghe, J. Ottl, M. Klumpp, J. C. Hartwieg, F. Cumin, U. Hassiepen, J. Trappe, R. Sedrani, S. Geisse, B. Gerhartz, P. Richert, E. Francotte, T. Wagner, M. Kromer T. Kosaka, R. L. Webb, D. F. Rigel, J. Maibaum, D. K. Baeschlin
A Novel Class Of Oral Direct Renin Inhibitors: Highly Poten 3, 5-Disubstituted Piperidines Bearing A Tricyclic P3-P1 Pharmacophore.
J. Med. Chem. V. 56 2196 2013
PubMed-ID: 23360239 | Reference-DOI: 10.1021/JM301706J

Molecule 1 - RENIN
	Chains	:	A, B
	EC Number	:	3.4.23.15
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Fragment	:	UNP RESIDUES 67-406
	Gene	:	REN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ANGIOTENSINOGENASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	0MJ	2	Ligand/Ion	(3S,5R)-5-{[(4-METHYLPHENYL)SULFONYL]AMINO}-N-(9H-XANTHEN-9-YLMETHYL)PIPERIDINE-3-CARBOXAMIDE
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	0MJ	1	Ligand/Ion	(3S,5R)-5-{[(4-METHYLPHENYL)SULFONYL]AMINO}-N-(9H-XANTHEN-9-YLMETHYL)PIPERIDINE-3-CARBOXAMIDE
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	0MJ	1	Ligand/Ion	(3S,5R)-5-{[(4-METHYLPHENYL)SULFONYL]AMINO}-N-(9H-XANTHEN-9-YLMETHYL)PIPERIDINE-3-CARBOXAMIDE
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:67 , MET A:100 , HOH A:1200	BINDING SITE FOR RESIDUE NAG A 1000
2	AC2	SOFTWARE	GLN A:13 , ASP A:32 , GLY A:34 , TYR A:75 , SER A:76 , THR A:77 , VAL A:120 , ASP A:215 , GLY A:217 , MET A:289 , ILE A:291 , PRO A:292 , HOH A:1146 , HOH A:1258	BINDING SITE FOR RESIDUE 0MJ A 1001
3	AC3	SOFTWARE	THR A:12 , GLN A:13 , TYR A:14 , VAL A:30 , THR A:216 , GLY A:217 , ALA A:218	BINDING SITE FOR RESIDUE SO4 A 1002
4	AC4	SOFTWARE	ASP A:11 , ALA A:272 , ASP A:273 , TYR A:274 , VAL A:275 , ALA A:285 , ARG A:307 , HOH A:1114	BINDING SITE FOR RESIDUE SO4 A 1003
5	AC5	SOFTWARE	ASN B:67 , MET B:100	BINDING SITE FOR RESIDUE NAG B 1000
6	AC6	SOFTWARE	GLN B:13 , ASP B:32 , GLY B:34 , TYR B:75 , SER B:76 , THR B:77 , VAL B:120 , ASP B:215 , GLY B:217 , ILE B:291 , PRO B:292 , HOH B:1205 , HOH B:1235	BINDING SITE FOR RESIDUE 0MJ B 1001
7	AC7	SOFTWARE	THR B:12 , GLN B:13 , TYR B:14 , VAL B:30 , THR B:216 , GLY B:217 , ALA B:218	BINDING SITE FOR RESIDUE SO4 B 1002

Asymmetric Unit

No.	Residues
1	A:45	-	A:50
2	A:206	-	A:210
3	A:249	-	A:282
4	B:45	-	B:50
5	B:206	-	B:210
6	B:249	-	B:282

Asymmetric Unit

No.	Residues
1	Thr A:22	-	Pro A:23
2	Leu A:110	-	Pro A:111
3	Pro A:293	-	Pro A:294
4	Gly A:296	-	Pro A:297
5	Thr B:22	-	Pro B:23
6	Leu B:110	-	Pro B:111
7	Pro B:293	-	Pro B:294
8	Gly B:296	-	Pro B:297

(no "SAP(SNP)/Variant" information available for 4GJC)

(no "PROSITE Motif" information available for 4GJC)

(no "Exon" information available for 4GJC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4gjca_ A: Chymosin (synonym: renin)                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...eeeeeeee....eeeeeeee.....eeee.......hhhhh.....hhhhh...eeeeeeeeee....eeeeeeeeeeeee..eeeeeeeeeeee.hhhhhh.....eeee..hhhhhhhhh.hhhhhhhhh......eeeeee........eeeee...hhh.eeeeeeeee.......eeee..eee..eeee....eeeee......eeehhhhhhhhhhhhh.ee....eeee.hhhhhh..eeeee..eeeeehhhhhh.........eee..eee..........eeehhhhhhheeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gjc A   -5 LTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  326
                                     4        14        24        34        44   ||   52        62        72        82        92    || 103       113       123       133       143       153      |162       172       182       192       202       212       222       232       242|      253       263       273      281B||     289       299       309       319       
                                                                               47A|                                                97|                                                         160C|                                                                               242|                                  281A|||                                             
                                                                                47B                                                 99                                                          160D                                                                                244                                   281B||                                             
                                                                                                                                                                                                                                                                                                                           281C|                                             
                                                                                                                                                                                                                                                                                                                            281D

Chain B from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4gjcb_ B: Chymosin (synonym: renin)                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...eeeeeeee....eeeeeeee.....eeee.......hhhhhh....hhhhh...eeeeeeeeee....eeeeeeeeeeeee..eeeeeeeeeeee.hhhhhh.....eeee..hhhhhhhhh.hhhhhhhhh......eeeeee........eeeee...hhh.eeeeeeeee.......eeee..eee..eeee....eeeee......eeehhhhhhhhhhhhh.ee....eeee..hhhhh..eeeee..eeeeehhhhhh.........eee..eee..........eeehhhhhhheeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gjc B   -5 LTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  326
                                     4        14        24        34        44   ||   52        62        72        82        92    || 103       113       123       133       143       153      |162       172       182       192       202       212       222       232       242|      253       263       273      281B||     289       299       309       319       
                                                                               47A|                                                97|                                                         160C|                                                                               242|                                  281A|||                                             
                                                                                47B                                                 99                                                          160D                                                                                244                                   281B||                                             
                                                                                                                                                                                                                                                                                                                           281C|                                             
                                                                                                                                                                                                                                                                                                                            281D

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Acid proteases (1120)

Superfamily: Acid proteases (1120)

Family: Pepsin-like (505)

Protein domain: Chymosin (synonym: renin) (67)

Human (Homo sapiens) [TaxId: 9606] (60)

1a	d4gjca_	A:
1b	d4gjcb_	B:

(no "CATH Domain" information available for 4GJC)

(no "Pfam Domain" information available for 4GJC)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Gly A:296 - Pro A:297	[ RasMol ]
		Gly B:296 - Pro B:297	[ RasMol ]
		Leu A:110 - Pro A:111	[ RasMol ]
		Leu B:110 - Pro B:111	[ RasMol ]
		Pro A:293 - Pro A:294	[ RasMol ]
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		Thr A:22 - Pro A:23	[ RasMol ]
		Thr B:22 - Pro B:23	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (6, 6)

Cis Peptide Bonds (8, 8)

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