4GJ6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF RENIN IN COMPLEX WITH NVP-AYZ832 (COMPOUND 6A)

Authors :   N. Ostermann, F. Zink, M. Kroemer

Date :   09 Aug 12 (Deposition) - 06 Mar 13 (Release) - 10 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.58

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Renin Inhibitor, Pharmacophore Search, Trans-3, 4-Disubstituted Pyrrolidine, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Lorthiois, W. Breitenstein, F. Cumin, C. Ehrhardt, E. Francotte, E. Jacoby, N. Ostermann, H. Sellner, T. Kosaka, R. L. Webb, D. F. Rigel, U. Hassiepen, P. Richert, T. Wagner, J. Maibaum
The Discovery Of Novel Potent Trans-3, 4-Disubstituted Pyrrolidine Inhibitors Of The Human Aspartic Protease Renin From In Silico Three-Dimensional (3D) Pharmacophore Searches.
J. Med. Chem. V. 56 2207 2013
PubMed-ID: 23425156 | Reference-DOI: 10.1021/JM3017078

Molecule 1 - RENIN
	Chains	:	A, B
	EC Number	:	3.4.23.15
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Fragment	:	UNP RESIDUES 67-406
	Gene	:	REN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ANGIOTENSINOGENASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	0LS	4	Ligand/Ion	N-{[(3S,4S)-4-BENZYLPYRROLIDIN-3-YL]METHYL}-4-CHLORO-N-PHENYLANILINE
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	0LS	2	Ligand/Ion	N-{[(3S,4S)-4-BENZYLPYRROLIDIN-3-YL]METHYL}-4-CHLORO-N-PHENYLANILINE
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	0LS	2	Ligand/Ion	N-{[(3S,4S)-4-BENZYLPYRROLIDIN-3-YL]METHYL}-4-CHLORO-N-PHENYLANILINE
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:67 , THR A:69	BINDING SITE FOR RESIDUE NAG A 1000
2	AC2	SOFTWARE	ASP A:32 , GLY A:34 , PHE A:117 , LEU A:213 , ASP A:215 , GLY A:217 , SER A:219 , TYR A:220 , ILE A:291 , 0LS A:1002	BINDING SITE FOR RESIDUE 0LS A 1001
3	AC3	SOFTWARE	THR A:12 , GLN A:13 , SER A:76 , PRO A:111 , LEU A:114 , PHE A:117 , SER A:219 , TYR A:220 , 0LS A:1001 , LEU B:241 , PHE B:242	BINDING SITE FOR RESIDUE 0LS A 1002
4	AC4	SOFTWARE	THR A:12 , GLN A:13 , TYR A:14 , VAL A:30 , THR A:216 , GLY A:217	BINDING SITE FOR RESIDUE SO4 A 1003
5	AC5	SOFTWARE	ASN B:67 , THR B:69	BINDING SITE FOR RESIDUE NAG B 1000
6	AC6	SOFTWARE	ASP B:32 , GLY B:34 , TYR B:75 , PHE B:117 , LEU B:213 , ASP B:215 , GLY B:217 , SER B:219 , TYR B:220 , 0LS B:1002	BINDING SITE FOR RESIDUE 0LS B 1001
7	AC7	SOFTWARE	LEU A:110 , PHE A:242 , THR B:12 , GLN B:13 , SER B:76 , PRO B:111 , ALA B:115 , PHE B:117 , SER B:219 , TYR B:220 , PHE B:242 , 0LS B:1001	BINDING SITE FOR RESIDUE 0LS B 1002
8	AC8	SOFTWARE	THR B:12 , GLN B:13 , TYR B:14 , VAL B:30 , THR B:216 , GLY B:217	BINDING SITE FOR RESIDUE SO4 B 1003
9	AC9	SOFTWARE	ASP B:11 , ALA B:272 , ASP B:273 , VAL B:275 , PHE B:276 , ARG B:307	BINDING SITE FOR RESIDUE SO4 B 1004

Asymmetric Unit

No.	Residues
1	A:45	-	A:50
2	A:206	-	A:210
3	A:249	-	A:282
4	B:45	-	B:50
5	B:206	-	B:210
6	B:249	-	B:282

Asymmetric Unit

No.	Residues
1	Thr A:22	-	Pro A:23
2	Leu A:110	-	Pro A:111
3	Pro A:293	-	Pro A:294
4	Gly A:296	-	Pro A:297
5	Thr B:22	-	Pro B:23
6	Leu B:110	-	Pro B:111
7	Pro B:293	-	Pro B:294
8	Gly B:296	-	Pro B:297

(no "SAP(SNP)/Variant" information available for 4GJ6)

(no "PROSITE Motif" information available for 4GJ6)

(no "Exon" information available for 4GJ6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4gj6a_ A: Chymosin (synonym: renin)                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee...eeeeeeee....eeeeeeee.....eeee......hhhhh...hhhhh...eeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeee.hhhhhh.....eeee..hhhhhhhhh.hhhhhhhhh......eeeeee........eeeee...hhh.eeeeeeeee.......eeeeeeeee..eeee....eeeee......eeehhhhhhhhhhhhh.ee....eeee.hhhhhh..eeeee..eeeeehhhhhh.........eee..eee..........eeehhhhhhheeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gj6 A   -4 TLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  326
                                     5        15        25        35        45||      56        66        76        86        96||     107       117       127       137       147       157||||   166       176       186       196       206       216       226       236     ||247       257       267       277    |||283       293       303       313       323   
                                                                             46|                                               97|                                                        158|||                                                                               242|                                  281A|||                                             
                                                                              48                                                99                                                        160B||                                                                                244                                   281B||                                             
                                                                                                                                                                                           160C|                                                                                                                       281C|                                             
                                                                                                                                                                                            160D                                                                                                                        281D

Chain B from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4gj6b_ B: Chymosin (synonym: renin)                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...eeeeeeee....eeeeeeee.....eeee......hhhhh...hhhhh...eeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeee.hhhhhh.....eeee..hhhhhhhhh.hhhhhhhhh......eeeeee.......eeeee...hhh.eeeeeeeee.......eeeeeeeee..eeee....eeeee......eeehhhhhhhhhhhhh.ee....eeee.hhhhhh..eeeee...eeeehhhhhh.........eee..eee..........eeehhhhhhheeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gj6 B   -5 LTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  326
                                     4        14        24        34        44 ||     55        65        75        85        95 ||    106       116       126       136       146       156   |   166       176       186       196       206       216       226       236     ||247       257       267       277    |||283       293       303       313       323   
                                                                              46|                                               97|                                                         160D                                                                               242|                                  281A|||                                             
                                                                               48                                                99                                                                                                                                             244                                   281B||                                             
                                                                                                                                                                                                                                                                                                                       281C|                                             
                                                                                                                                                                                                                                                                                                                        281D

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Acid proteases (1120)

Superfamily: Acid proteases (1120)

Family: Pepsin-like (505)

Protein domain: Chymosin (synonym: renin) (67)

Human (Homo sapiens) [TaxId: 9606] (60)

1a	d4gj6a_	A:
1b	d4gj6b_	B:

(no "CATH Domain" information available for 4GJ6)

(no "Pfam Domain" information available for 4GJ6)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:296 - Pro A:297	[ RasMol ]
		Gly B:296 - Pro B:297	[ RasMol ]
		Leu A:110 - Pro A:111	[ RasMol ]
		Leu B:110 - Pro B:111	[ RasMol ]
		Pro A:293 - Pro A:294	[ RasMol ]
		Pro B:293 - Pro B:294	[ RasMol ]
		Thr A:22 - Pro A:23	[ RasMol ]
		Thr B:22 - Pro B:23	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

SS Bonds (6, 6)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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