Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-FLUOROCYTOSINE
 
Authors :  A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date :  29 Aug 14  (Deposition) - 17 Sep 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,E  (1x)
Biol. Unit 3:  D,F  (1x)
Keywords :  Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Fluorocytosine, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Fluorocytosine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOSINE DEAMINASE
    Chains: A, B, C, D, E, F
    EC Number: 3.5.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: KPNJ1_03949
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 1420012
    Strain: 30660/NJST258_1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   C E 
Biological Unit 3 (1x):    D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 58)

Asymmetric Unit (7, 58)
No.NameCountTypeFull Name
11LD6Ligand/Ion5-FLUOROCYTOSINE
2ACY10Ligand/IonACETIC ACID
3EDO15Ligand/Ion1,2-ETHANEDIOL
4FE26Ligand/IonFE (II) ION
5FLC1Ligand/IonCITRATE ANION
6GOL18Ligand/IonGLYCEROL
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (6, 23)
No.NameCountTypeFull Name
11LD2Ligand/Ion5-FLUOROCYTOSINE
2ACY3Ligand/IonACETIC ACID
3EDO9Ligand/Ion1,2-ETHANEDIOL
4FE22Ligand/IonFE (II) ION
5FLC-1Ligand/IonCITRATE ANION
6GOL6Ligand/IonGLYCEROL
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (6, 19)
No.NameCountTypeFull Name
11LD2Ligand/Ion5-FLUOROCYTOSINE
2ACY4Ligand/IonACETIC ACID
3EDO3Ligand/Ion1,2-ETHANEDIOL
4FE22Ligand/IonFE (II) ION
5FLC1Ligand/IonCITRATE ANION
6GOL7Ligand/IonGLYCEROL
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (6, 16)
No.NameCountTypeFull Name
11LD2Ligand/Ion5-FLUOROCYTOSINE
2ACY3Ligand/IonACETIC ACID
3EDO3Ligand/Ion1,2-ETHANEDIOL
4FE22Ligand/IonFE (II) ION
5FLC-1Ligand/IonCITRATE ANION
6GOL5Ligand/IonGLYCEROL
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (58, 58)

Asymmetric Unit (58, 58)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:58 , LEU A:76 , PHE A:149 , GLN A:151 , ILE A:178 , GLU A:212 , GLU A:273 , ASP A:308 , SER A:309 , TRP A:314 , FE2 A:502 , HOH A:606BINDING SITE FOR RESIDUE 1LD A 501
02AC2SOFTWAREHIS A:56 , HIS A:58 , HIS A:209 , HIS A:241 , ASP A:308 , 1LD A:501BINDING SITE FOR RESIDUE FE2 A 502
03AC3SOFTWAREARG A:185 , GLN A:217 , ARG A:219 , PHE A:220 , GLU A:222 , VAL A:223 , HOH A:613 , HOH A:714BINDING SITE FOR RESIDUE GOL A 503
04AC4SOFTWAREASP A:327 , ALA A:328 , HOH A:699 , ASP B:327 , ALA B:328BINDING SITE FOR RESIDUE GOL A 504
05AC5SOFTWAREASP A:143 , ASN A:361 , PRO A:369 , ASN A:371 , HIS A:396BINDING SITE FOR RESIDUE ACY A 505
06AC6SOFTWAREASP A:140BINDING SITE FOR RESIDUE ACY A 506
07AC7SOFTWAREASP A:282 , PRO A:285 , ARG A:287 , ASP B:282 , PRO B:285 , ARG B:287BINDING SITE FOR RESIDUE GOL A 507
08AC8SOFTWARESER A:254 , ARG A:292 , GLU A:295 , HOH A:617 , HOH A:747BINDING SITE FOR RESIDUE GOL A 508
09AC9SOFTWAREARG A:161 , SER A:190 , ASP A:197BINDING SITE FOR RESIDUE EDO A 509
10BC1SOFTWARESER A:156 , ASN A:183 , ARG D:229BINDING SITE FOR RESIDUE EDO A 510
11BC2SOFTWAREARG A:46 , ASP A:376 , GLU A:378 , ARG A:386BINDING SITE FOR RESIDUE EDO A 511
12BC3SOFTWAREASP A:42 , ARG A:46 , LEU A:391 , THR A:392BINDING SITE FOR RESIDUE EDO A 512
13BC4SOFTWAREHIS B:58 , LEU B:76 , PHE B:149 , GLN B:151 , ILE B:178 , GLU B:212 , GLU B:273 , ASP B:308 , SER B:309 , TRP B:314 , FE2 B:502 , HOH B:613BINDING SITE FOR RESIDUE 1LD B 501
14BC5SOFTWAREHIS B:56 , HIS B:58 , HIS B:209 , HIS B:241 , ASP B:308 , 1LD B:501BINDING SITE FOR RESIDUE FE2 B 502
15BC6SOFTWAREARG B:185 , GLN B:217 , ARG B:219 , PHE B:220 , GLU B:222 , VAL B:223 , PEG B:505 , HOH B:611 , HOH B:709 , ARG F:185BINDING SITE FOR RESIDUE GOL B 503
16BC7SOFTWAREARG B:292 , GLU B:295 , HOH B:622BINDING SITE FOR RESIDUE ACY B 504
17BC8SOFTWAREHIS B:180 , ARG B:185 , ILE B:213 , ASP B:215 , GLN B:217 , SER B:218 , PHE B:220 , GOL B:503 , HOH B:626 , LYS E:255 , HOH E:630 , HOH E:792BINDING SITE FOR RESIDUE PEG B 505
18BC9SOFTWARETRP A:70 , TYR B:338 , LEU B:341 , GLN B:342 , TYR B:381BINDING SITE FOR RESIDUE GOL B 506
19CC1SOFTWAREASP B:143 , PRO B:369 , ASN B:371 , ARG B:395 , HIS B:396BINDING SITE FOR RESIDUE EDO B 507
20CC2SOFTWARETYR B:181 , ASN B:183BINDING SITE FOR RESIDUE EDO B 508
21CC3SOFTWAREARG B:229BINDING SITE FOR RESIDUE EDO B 509
22CC4SOFTWAREGLY B:171 , ASP B:173 , ARG B:204 , ASN D:159BINDING SITE FOR RESIDUE EDO B 510
23CC5SOFTWAREARG B:201 , TYR B:202BINDING SITE FOR RESIDUE EDO B 511
24CC6SOFTWAREHIS C:58 , LEU C:76 , PHE C:149 , GLN C:151 , ILE C:178 , GLU C:212 , GLU C:273 , ASP C:308 , SER C:309 , TRP C:314 , FE2 C:502 , HOH C:601BINDING SITE FOR RESIDUE 1LD C 501
25CC7SOFTWAREHIS C:56 , HIS C:58 , HIS C:209 , HIS C:241 , ASP C:308 , 1LD C:501BINDING SITE FOR RESIDUE FE2 C 502
26CC8SOFTWAREARG C:185 , GLN C:217 , ARG C:219 , PHE C:220 , GLU C:222 , VAL C:223 , HOH C:618 , HOH C:752BINDING SITE FOR RESIDUE GOL C 503
27CC9SOFTWAREASP C:282 , PRO C:285 , ARG C:287 , ASP E:282 , PRO E:285 , ARG E:287BINDING SITE FOR RESIDUE GOL C 504
28DC1SOFTWAREARG C:9 , ARG C:10 , GLN C:342 , ASN C:379 , ASP C:380BINDING SITE FOR RESIDUE GOL C 505
29DC2SOFTWAREPHE C:257 , ARG C:292 , GLU C:295 , HOH C:607 , HOH C:679BINDING SITE FOR RESIDUE ACY C 506
30DC3SOFTWAREASP C:42 , ARG C:46 , THR C:392 , GLN C:402BINDING SITE FOR RESIDUE EDO C 507
31DC4SOFTWAREGLY C:337 , TYR C:338 , HOH C:780 , TRP E:70BINDING SITE FOR RESIDUE EDO C 508
32DC5SOFTWAREHIS D:58 , LEU D:76 , PHE D:149 , GLN D:151 , ILE D:178 , GLU D:212 , GLU D:273 , LEU D:277 , ASP D:308 , SER D:309 , TRP D:314 , FE2 D:502 , HOH D:608BINDING SITE FOR RESIDUE 1LD D 501
33DC6SOFTWAREHIS D:56 , HIS D:58 , HIS D:209 , HIS D:241 , ASP D:308 , 1LD D:501BINDING SITE FOR RESIDUE FE2 D 502
34DC7SOFTWAREGLU B:162 , ARG D:201BINDING SITE FOR RESIDUE GOL D 503
35DC8SOFTWAREARG D:185 , GLN D:217 , ARG D:219 , PHE D:220 , GLU D:222 , VAL D:223 , HOH D:618 , HOH D:713BINDING SITE FOR RESIDUE GOL D 504
36DC9SOFTWAREARG D:161 , ASP D:197BINDING SITE FOR RESIDUE GOL D 505
37EC1SOFTWAREARG D:292BINDING SITE FOR RESIDUE ACY D 506
38EC2SOFTWAREARG F:201BINDING SITE FOR RESIDUE EDO D 507
39EC3SOFTWAREALA C:262 , SER D:156 , ASN D:183BINDING SITE FOR RESIDUE EDO D 508
40EC4SOFTWAREILE D:168 , GLU D:169 , ARG D:204BINDING SITE FOR RESIDUE EDO D 509
41EC5SOFTWAREHIS E:58 , LEU E:76 , GLN E:151 , ILE E:178 , GLU E:212 , GLU E:273 , ASP E:308 , SER E:309 , TRP E:314 , FE2 E:502 , HOH E:605BINDING SITE FOR RESIDUE 1LD E 501
42EC6SOFTWAREHIS E:56 , HIS E:58 , HIS E:209 , HIS E:241 , ASP E:308 , 1LD E:501BINDING SITE FOR RESIDUE FE2 E 502
43EC7SOFTWAREARG E:185 , GLN E:217 , ARG E:219 , PHE E:220 , GLU E:222 , VAL E:223 , HOH E:614 , HOH E:713BINDING SITE FOR RESIDUE GOL E 503
44EC8SOFTWAREASP C:327 , ALA C:328 , ILE C:332 , ASP E:327 , ALA E:328 , HIS E:331 , HOH E:798BINDING SITE FOR RESIDUE GOL E 504
45EC9SOFTWAREMET B:33 , ILE E:23 , ASP E:360 , ASN E:361 , GLY E:367 , ARG E:368 , PRO E:369BINDING SITE FOR RESIDUE GOL E 505
46FC1SOFTWAREHIS E:113 , ASP E:143 , ASN E:361 , PRO E:369 , ASN E:371 , ARG E:395 , HIS E:396 , HOH E:771BINDING SITE FOR RESIDUE GOL E 506
47FC2SOFTWAREARG E:292 , GLU E:295 , HOH E:708BINDING SITE FOR RESIDUE ACY E 507
48FC3SOFTWAREHIS E:180 , ILE E:213 , ASP E:215 , SER E:218 , HOH E:681 , TYR F:252 , LYS F:255BINDING SITE FOR RESIDUE ACY E 508
49FC4SOFTWAREGLU A:12 , GLN E:11BINDING SITE FOR RESIDUE ACY E 509
50FC5SOFTWARELEU E:100 , ASP E:140BINDING SITE FOR RESIDUE FLC E 510
51FC6SOFTWAREASP B:282 , ARG B:287 , HOH C:633 , ASN E:250BINDING SITE FOR RESIDUE EDO E 511
52FC7SOFTWAREASP D:282 , PRO D:285 , ARG D:287 , PRO F:285 , ARG F:287BINDING SITE FOR RESIDUE GOL F 501
53FC8SOFTWAREHIS F:58 , LEU F:76 , PHE F:149 , GLN F:151 , GLU F:212 , GLU F:273 , ASP F:308 , SER F:309 , TRP F:314 , FE2 F:503 , HOH F:631BINDING SITE FOR RESIDUE 1LD F 502
54FC9SOFTWAREHIS F:56 , HIS F:58 , HIS F:209 , HIS F:241 , ASP F:308 , 1LD F:502BINDING SITE FOR RESIDUE FE2 F 503
55GC1SOFTWAREARG F:185 , GLN F:217 , ARG F:219 , PHE F:220 , GLU F:222 , VAL F:223 , HOH F:604 , HOH F:703BINDING SITE FOR RESIDUE GOL F 504
56GC2SOFTWAREARG F:292 , GLU F:295 , HOH F:715BINDING SITE FOR RESIDUE ACY F 505
57GC3SOFTWAREARG F:161 , SER F:190 , MET F:193 , PHE F:194 , ASP F:197 , HOH F:762BINDING SITE FOR RESIDUE ACY F 506
58GC4SOFTWAREASP D:327 , ALA D:328 , HIS D:331 , ASP F:327 , ALA F:328 , HIS F:331 , HOH F:754BINDING SITE FOR RESIDUE PEG F 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R88)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Glu A:67 -Pro A:68
2Trp A:284 -Pro A:285
3Glu B:67 -Pro B:68
4Trp B:284 -Pro B:285
5Glu C:67 -Pro C:68
6Trp C:284 -Pro C:285
7Glu D:67 -Pro D:68
8Trp D:284 -Pro D:285
9Glu E:67 -Pro E:68
10Trp E:284 -Pro E:285
11Glu F:67 -Pro F:68
12Trp F:284 -Pro F:285

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R88)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R88)

(-) Exons   (0, 0)

(no "Exon" information available for 4R88)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee...........ee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r88 A   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain B from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee..........eeeeeeeeee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhh...ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeee.....ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r88 B   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPAN 413
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410   


Chain C from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee..........eee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhh...ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r88 C   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain D from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee..eeeeeeee.........eee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r88 D   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA 412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  


Chain E from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee...........ee.....ee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r88 E   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain F from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee..........eee.....ee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhh...eeeeee..eeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r88 F   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R88)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R88)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R88)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4R88)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    1LD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ACY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FLC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:67 - Pro A:68   [ RasMol ]  
    Glu B:67 - Pro B:68   [ RasMol ]  
    Glu C:67 - Pro C:68   [ RasMol ]  
    Glu D:67 - Pro D:68   [ RasMol ]  
    Glu E:67 - Pro E:68   [ RasMol ]  
    Glu F:67 - Pro F:68   [ RasMol ]  
    Trp A:284 - Pro A:285   [ RasMol ]  
    Trp B:284 - Pro B:285   [ RasMol ]  
    Trp C:284 - Pro C:285   [ RasMol ]  
    Trp D:284 - Pro D:285   [ RasMol ]  
    Trp E:284 - Pro E:285   [ RasMol ]  
    Trp F:284 - Pro F:285   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4r88
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A0A0E1CHI1_K | A0A0E1CHI1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  3.5.4.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A0A0E1CHI1_K | A0A0E1CHI1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0E1CHI1_K | A0A0E1CHI1: 4r7w 4r85

(-) Related Entries Specified in the PDB File

4r7w THE SAME PROTEIN COMPLEXED WITH PHOSPHOCYTOSINE
4r85