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4R88
Biol. Unit 1
Info
Asym.Unit (859 KB)
Biol.Unit 1 (290 KB)
Biol.Unit 2 (287 KB)
Biol.Unit 3 (288 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-FLUOROCYTOSINE
Authors
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date
:
29 Aug 14 (Deposition) - 17 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D,F (1x)
Keywords
:
Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Fluorocytosine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Fluorocytosine
To Be Published
[
close entry info
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Hetero Components
(6, 23)
Info
All Hetero Components
1a: 5-FLUOROCYTOSINE (1LDa)
1b: 5-FLUOROCYTOSINE (1LDb)
1c: 5-FLUOROCYTOSINE (1LDc)
1d: 5-FLUOROCYTOSINE (1LDd)
1e: 5-FLUOROCYTOSINE (1LDe)
1f: 5-FLUOROCYTOSINE (1LDf)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
2c: ACETIC ACID (ACYc)
2d: ACETIC ACID (ACYd)
2e: ACETIC ACID (ACYe)
2f: ACETIC ACID (ACYf)
2g: ACETIC ACID (ACYg)
2h: ACETIC ACID (ACYh)
2i: ACETIC ACID (ACYi)
2j: ACETIC ACID (ACYj)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
4e: FE (II) ION (FE2e)
4f: FE (II) ION (FE2f)
5a: CITRATE ANION (FLCa)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
6r: GLYCEROL (GOLr)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1LD
2
Ligand/Ion
5-FLUOROCYTOSINE
2
ACY
3
Ligand/Ion
ACETIC ACID
3
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
4
FE2
2
Ligand/Ion
FE (II) ION
5
FLC
-1
Ligand/Ion
CITRATE ANION
6
GOL
6
Ligand/Ion
GLYCEROL
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: DC7 (SOFTWARE)
25: EC9 (SOFTWARE)
26: FC4 (SOFTWARE)
27: FC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:58 , LEU A:76 , PHE A:149 , GLN A:151 , ILE A:178 , GLU A:212 , GLU A:273 , ASP A:308 , SER A:309 , TRP A:314 , FE2 A:502 , HOH A:606
BINDING SITE FOR RESIDUE 1LD A 501
02
AC2
SOFTWARE
HIS A:56 , HIS A:58 , HIS A:209 , HIS A:241 , ASP A:308 , 1LD A:501
BINDING SITE FOR RESIDUE FE2 A 502
03
AC3
SOFTWARE
ARG A:185 , GLN A:217 , ARG A:219 , PHE A:220 , GLU A:222 , VAL A:223 , HOH A:613 , HOH A:714
BINDING SITE FOR RESIDUE GOL A 503
04
AC4
SOFTWARE
ASP A:327 , ALA A:328 , HOH A:699 , ASP B:327 , ALA B:328
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
ASP A:143 , ASN A:361 , PRO A:369 , ASN A:371 , HIS A:396
BINDING SITE FOR RESIDUE ACY A 505
06
AC6
SOFTWARE
ASP A:140
BINDING SITE FOR RESIDUE ACY A 506
07
AC7
SOFTWARE
ASP A:282 , PRO A:285 , ARG A:287 , ASP B:282 , PRO B:285 , ARG B:287
BINDING SITE FOR RESIDUE GOL A 507
08
AC8
SOFTWARE
SER A:254 , ARG A:292 , GLU A:295 , HOH A:617 , HOH A:747
BINDING SITE FOR RESIDUE GOL A 508
09
AC9
SOFTWARE
ARG A:161 , SER A:190 , ASP A:197
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
SER A:156 , ASN A:183 , ARG D:229
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
ARG A:46 , ASP A:376 , GLU A:378 , ARG A:386
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
ASP A:42 , ARG A:46 , LEU A:391 , THR A:392
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
HIS B:58 , LEU B:76 , PHE B:149 , GLN B:151 , ILE B:178 , GLU B:212 , GLU B:273 , ASP B:308 , SER B:309 , TRP B:314 , FE2 B:502 , HOH B:613
BINDING SITE FOR RESIDUE 1LD B 501
14
BC5
SOFTWARE
HIS B:56 , HIS B:58 , HIS B:209 , HIS B:241 , ASP B:308 , 1LD B:501
BINDING SITE FOR RESIDUE FE2 B 502
15
BC6
SOFTWARE
ARG B:185 , GLN B:217 , ARG B:219 , PHE B:220 , GLU B:222 , VAL B:223 , PEG B:505 , HOH B:611 , HOH B:709 , ARG F:185
BINDING SITE FOR RESIDUE GOL B 503
16
BC7
SOFTWARE
ARG B:292 , GLU B:295 , HOH B:622
BINDING SITE FOR RESIDUE ACY B 504
17
BC8
SOFTWARE
HIS B:180 , ARG B:185 , ILE B:213 , ASP B:215 , GLN B:217 , SER B:218 , PHE B:220 , GOL B:503 , HOH B:626 , LYS E:255 , HOH E:630 , HOH E:792
BINDING SITE FOR RESIDUE PEG B 505
18
BC9
SOFTWARE
TRP A:70 , TYR B:338 , LEU B:341 , GLN B:342 , TYR B:381
BINDING SITE FOR RESIDUE GOL B 506
19
CC1
SOFTWARE
ASP B:143 , PRO B:369 , ASN B:371 , ARG B:395 , HIS B:396
BINDING SITE FOR RESIDUE EDO B 507
20
CC2
SOFTWARE
TYR B:181 , ASN B:183
BINDING SITE FOR RESIDUE EDO B 508
21
CC3
SOFTWARE
ARG B:229
BINDING SITE FOR RESIDUE EDO B 509
22
CC4
SOFTWARE
GLY B:171 , ASP B:173 , ARG B:204 , ASN D:159
BINDING SITE FOR RESIDUE EDO B 510
23
CC5
SOFTWARE
ARG B:201 , TYR B:202
BINDING SITE FOR RESIDUE EDO B 511
24
DC7
SOFTWARE
GLU B:162 , ARG D:201
BINDING SITE FOR RESIDUE GOL D 503
25
EC9
SOFTWARE
MET B:33 , ILE E:23 , ASP E:360 , ASN E:361 , GLY E:367 , ARG E:368 , PRO E:369
BINDING SITE FOR RESIDUE GOL E 505
26
FC4
SOFTWARE
GLU A:12 , GLN E:11
BINDING SITE FOR RESIDUE ACY E 509
27
FC6
SOFTWARE
ASP B:282 , ARG B:287 , HOH C:633 , ASN E:250
BINDING SITE FOR RESIDUE EDO E 511
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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