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4R88
Asym. Unit
Info
Asym.Unit (859 KB)
Biol.Unit 1 (290 KB)
Biol.Unit 2 (287 KB)
Biol.Unit 3 (288 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-FLUOROCYTOSINE
Authors
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date
:
29 Aug 14 (Deposition) - 17 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D,F (1x)
Keywords
:
Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Fluorocytosine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Fluorocytosine
To Be Published
[
close entry info
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Hetero Components
(7, 58)
Info
All Hetero Components
1a: 5-FLUOROCYTOSINE (1LDa)
1b: 5-FLUOROCYTOSINE (1LDb)
1c: 5-FLUOROCYTOSINE (1LDc)
1d: 5-FLUOROCYTOSINE (1LDd)
1e: 5-FLUOROCYTOSINE (1LDe)
1f: 5-FLUOROCYTOSINE (1LDf)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
2c: ACETIC ACID (ACYc)
2d: ACETIC ACID (ACYd)
2e: ACETIC ACID (ACYe)
2f: ACETIC ACID (ACYf)
2g: ACETIC ACID (ACYg)
2h: ACETIC ACID (ACYh)
2i: ACETIC ACID (ACYi)
2j: ACETIC ACID (ACYj)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
4e: FE (II) ION (FE2e)
4f: FE (II) ION (FE2f)
5a: CITRATE ANION (FLCa)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
6r: GLYCEROL (GOLr)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1LD
6
Ligand/Ion
5-FLUOROCYTOSINE
2
ACY
10
Ligand/Ion
ACETIC ACID
3
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
4
FE2
6
Ligand/Ion
FE (II) ION
5
FLC
1
Ligand/Ion
CITRATE ANION
6
GOL
18
Ligand/Ion
GLYCEROL
7
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:58 , LEU A:76 , PHE A:149 , GLN A:151 , ILE A:178 , GLU A:212 , GLU A:273 , ASP A:308 , SER A:309 , TRP A:314 , FE2 A:502 , HOH A:606
BINDING SITE FOR RESIDUE 1LD A 501
02
AC2
SOFTWARE
HIS A:56 , HIS A:58 , HIS A:209 , HIS A:241 , ASP A:308 , 1LD A:501
BINDING SITE FOR RESIDUE FE2 A 502
03
AC3
SOFTWARE
ARG A:185 , GLN A:217 , ARG A:219 , PHE A:220 , GLU A:222 , VAL A:223 , HOH A:613 , HOH A:714
BINDING SITE FOR RESIDUE GOL A 503
04
AC4
SOFTWARE
ASP A:327 , ALA A:328 , HOH A:699 , ASP B:327 , ALA B:328
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
ASP A:143 , ASN A:361 , PRO A:369 , ASN A:371 , HIS A:396
BINDING SITE FOR RESIDUE ACY A 505
06
AC6
SOFTWARE
ASP A:140
BINDING SITE FOR RESIDUE ACY A 506
07
AC7
SOFTWARE
ASP A:282 , PRO A:285 , ARG A:287 , ASP B:282 , PRO B:285 , ARG B:287
BINDING SITE FOR RESIDUE GOL A 507
08
AC8
SOFTWARE
SER A:254 , ARG A:292 , GLU A:295 , HOH A:617 , HOH A:747
BINDING SITE FOR RESIDUE GOL A 508
09
AC9
SOFTWARE
ARG A:161 , SER A:190 , ASP A:197
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
SER A:156 , ASN A:183 , ARG D:229
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
ARG A:46 , ASP A:376 , GLU A:378 , ARG A:386
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
ASP A:42 , ARG A:46 , LEU A:391 , THR A:392
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
HIS B:58 , LEU B:76 , PHE B:149 , GLN B:151 , ILE B:178 , GLU B:212 , GLU B:273 , ASP B:308 , SER B:309 , TRP B:314 , FE2 B:502 , HOH B:613
BINDING SITE FOR RESIDUE 1LD B 501
14
BC5
SOFTWARE
HIS B:56 , HIS B:58 , HIS B:209 , HIS B:241 , ASP B:308 , 1LD B:501
BINDING SITE FOR RESIDUE FE2 B 502
15
BC6
SOFTWARE
ARG B:185 , GLN B:217 , ARG B:219 , PHE B:220 , GLU B:222 , VAL B:223 , PEG B:505 , HOH B:611 , HOH B:709 , ARG F:185
BINDING SITE FOR RESIDUE GOL B 503
16
BC7
SOFTWARE
ARG B:292 , GLU B:295 , HOH B:622
BINDING SITE FOR RESIDUE ACY B 504
17
BC8
SOFTWARE
HIS B:180 , ARG B:185 , ILE B:213 , ASP B:215 , GLN B:217 , SER B:218 , PHE B:220 , GOL B:503 , HOH B:626 , LYS E:255 , HOH E:630 , HOH E:792
BINDING SITE FOR RESIDUE PEG B 505
18
BC9
SOFTWARE
TRP A:70 , TYR B:338 , LEU B:341 , GLN B:342 , TYR B:381
BINDING SITE FOR RESIDUE GOL B 506
19
CC1
SOFTWARE
ASP B:143 , PRO B:369 , ASN B:371 , ARG B:395 , HIS B:396
BINDING SITE FOR RESIDUE EDO B 507
20
CC2
SOFTWARE
TYR B:181 , ASN B:183
BINDING SITE FOR RESIDUE EDO B 508
21
CC3
SOFTWARE
ARG B:229
BINDING SITE FOR RESIDUE EDO B 509
22
CC4
SOFTWARE
GLY B:171 , ASP B:173 , ARG B:204 , ASN D:159
BINDING SITE FOR RESIDUE EDO B 510
23
CC5
SOFTWARE
ARG B:201 , TYR B:202
BINDING SITE FOR RESIDUE EDO B 511
24
CC6
SOFTWARE
HIS C:58 , LEU C:76 , PHE C:149 , GLN C:151 , ILE C:178 , GLU C:212 , GLU C:273 , ASP C:308 , SER C:309 , TRP C:314 , FE2 C:502 , HOH C:601
BINDING SITE FOR RESIDUE 1LD C 501
25
CC7
SOFTWARE
HIS C:56 , HIS C:58 , HIS C:209 , HIS C:241 , ASP C:308 , 1LD C:501
BINDING SITE FOR RESIDUE FE2 C 502
26
CC8
SOFTWARE
ARG C:185 , GLN C:217 , ARG C:219 , PHE C:220 , GLU C:222 , VAL C:223 , HOH C:618 , HOH C:752
BINDING SITE FOR RESIDUE GOL C 503
27
CC9
SOFTWARE
ASP C:282 , PRO C:285 , ARG C:287 , ASP E:282 , PRO E:285 , ARG E:287
BINDING SITE FOR RESIDUE GOL C 504
28
DC1
SOFTWARE
ARG C:9 , ARG C:10 , GLN C:342 , ASN C:379 , ASP C:380
BINDING SITE FOR RESIDUE GOL C 505
29
DC2
SOFTWARE
PHE C:257 , ARG C:292 , GLU C:295 , HOH C:607 , HOH C:679
BINDING SITE FOR RESIDUE ACY C 506
30
DC3
SOFTWARE
ASP C:42 , ARG C:46 , THR C:392 , GLN C:402
BINDING SITE FOR RESIDUE EDO C 507
31
DC4
SOFTWARE
GLY C:337 , TYR C:338 , HOH C:780 , TRP E:70
BINDING SITE FOR RESIDUE EDO C 508
32
DC5
SOFTWARE
HIS D:58 , LEU D:76 , PHE D:149 , GLN D:151 , ILE D:178 , GLU D:212 , GLU D:273 , LEU D:277 , ASP D:308 , SER D:309 , TRP D:314 , FE2 D:502 , HOH D:608
BINDING SITE FOR RESIDUE 1LD D 501
33
DC6
SOFTWARE
HIS D:56 , HIS D:58 , HIS D:209 , HIS D:241 , ASP D:308 , 1LD D:501
BINDING SITE FOR RESIDUE FE2 D 502
34
DC7
SOFTWARE
GLU B:162 , ARG D:201
BINDING SITE FOR RESIDUE GOL D 503
35
DC8
SOFTWARE
ARG D:185 , GLN D:217 , ARG D:219 , PHE D:220 , GLU D:222 , VAL D:223 , HOH D:618 , HOH D:713
BINDING SITE FOR RESIDUE GOL D 504
36
DC9
SOFTWARE
ARG D:161 , ASP D:197
BINDING SITE FOR RESIDUE GOL D 505
37
EC1
SOFTWARE
ARG D:292
BINDING SITE FOR RESIDUE ACY D 506
38
EC2
SOFTWARE
ARG F:201
BINDING SITE FOR RESIDUE EDO D 507
39
EC3
SOFTWARE
ALA C:262 , SER D:156 , ASN D:183
BINDING SITE FOR RESIDUE EDO D 508
40
EC4
SOFTWARE
ILE D:168 , GLU D:169 , ARG D:204
BINDING SITE FOR RESIDUE EDO D 509
41
EC5
SOFTWARE
HIS E:58 , LEU E:76 , GLN E:151 , ILE E:178 , GLU E:212 , GLU E:273 , ASP E:308 , SER E:309 , TRP E:314 , FE2 E:502 , HOH E:605
BINDING SITE FOR RESIDUE 1LD E 501
42
EC6
SOFTWARE
HIS E:56 , HIS E:58 , HIS E:209 , HIS E:241 , ASP E:308 , 1LD E:501
BINDING SITE FOR RESIDUE FE2 E 502
43
EC7
SOFTWARE
ARG E:185 , GLN E:217 , ARG E:219 , PHE E:220 , GLU E:222 , VAL E:223 , HOH E:614 , HOH E:713
BINDING SITE FOR RESIDUE GOL E 503
44
EC8
SOFTWARE
ASP C:327 , ALA C:328 , ILE C:332 , ASP E:327 , ALA E:328 , HIS E:331 , HOH E:798
BINDING SITE FOR RESIDUE GOL E 504
45
EC9
SOFTWARE
MET B:33 , ILE E:23 , ASP E:360 , ASN E:361 , GLY E:367 , ARG E:368 , PRO E:369
BINDING SITE FOR RESIDUE GOL E 505
46
FC1
SOFTWARE
HIS E:113 , ASP E:143 , ASN E:361 , PRO E:369 , ASN E:371 , ARG E:395 , HIS E:396 , HOH E:771
BINDING SITE FOR RESIDUE GOL E 506
47
FC2
SOFTWARE
ARG E:292 , GLU E:295 , HOH E:708
BINDING SITE FOR RESIDUE ACY E 507
48
FC3
SOFTWARE
HIS E:180 , ILE E:213 , ASP E:215 , SER E:218 , HOH E:681 , TYR F:252 , LYS F:255
BINDING SITE FOR RESIDUE ACY E 508
49
FC4
SOFTWARE
GLU A:12 , GLN E:11
BINDING SITE FOR RESIDUE ACY E 509
50
FC5
SOFTWARE
LEU E:100 , ASP E:140
BINDING SITE FOR RESIDUE FLC E 510
51
FC6
SOFTWARE
ASP B:282 , ARG B:287 , HOH C:633 , ASN E:250
BINDING SITE FOR RESIDUE EDO E 511
52
FC7
SOFTWARE
ASP D:282 , PRO D:285 , ARG D:287 , PRO F:285 , ARG F:287
BINDING SITE FOR RESIDUE GOL F 501
53
FC8
SOFTWARE
HIS F:58 , LEU F:76 , PHE F:149 , GLN F:151 , GLU F:212 , GLU F:273 , ASP F:308 , SER F:309 , TRP F:314 , FE2 F:503 , HOH F:631
BINDING SITE FOR RESIDUE 1LD F 502
54
FC9
SOFTWARE
HIS F:56 , HIS F:58 , HIS F:209 , HIS F:241 , ASP F:308 , 1LD F:502
BINDING SITE FOR RESIDUE FE2 F 503
55
GC1
SOFTWARE
ARG F:185 , GLN F:217 , ARG F:219 , PHE F:220 , GLU F:222 , VAL F:223 , HOH F:604 , HOH F:703
BINDING SITE FOR RESIDUE GOL F 504
56
GC2
SOFTWARE
ARG F:292 , GLU F:295 , HOH F:715
BINDING SITE FOR RESIDUE ACY F 505
57
GC3
SOFTWARE
ARG F:161 , SER F:190 , MET F:193 , PHE F:194 , ASP F:197 , HOH F:762
BINDING SITE FOR RESIDUE ACY F 506
58
GC4
SOFTWARE
ASP D:327 , ALA D:328 , HIS D:331 , ASP F:327 , ALA F:328 , HIS F:331 , HOH F:754
BINDING SITE FOR RESIDUE PEG F 507
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SAPs(SNPs)/Variants
(0, 0)
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(0, 0)
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