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4R88
Biol. Unit 3
Info
Asym.Unit (859 KB)
Biol.Unit 1 (290 KB)
Biol.Unit 2 (287 KB)
Biol.Unit 3 (288 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-FLUOROCYTOSINE
Authors
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date
:
29 Aug 14 (Deposition) - 17 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D,F (1x)
Keywords
:
Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Fluorocytosine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Fluorocytosine
To Be Published
[
close entry info
]
Hetero Components
(6, 16)
Info
All Hetero Components
1a: 5-FLUOROCYTOSINE (1LDa)
1b: 5-FLUOROCYTOSINE (1LDb)
1c: 5-FLUOROCYTOSINE (1LDc)
1d: 5-FLUOROCYTOSINE (1LDd)
1e: 5-FLUOROCYTOSINE (1LDe)
1f: 5-FLUOROCYTOSINE (1LDf)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
2c: ACETIC ACID (ACYc)
2d: ACETIC ACID (ACYd)
2e: ACETIC ACID (ACYe)
2f: ACETIC ACID (ACYf)
2g: ACETIC ACID (ACYg)
2h: ACETIC ACID (ACYh)
2i: ACETIC ACID (ACYi)
2j: ACETIC ACID (ACYj)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
4e: FE (II) ION (FE2e)
4f: FE (II) ION (FE2f)
5a: CITRATE ANION (FLCa)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
6r: GLYCEROL (GOLr)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1LD
2
Ligand/Ion
5-FLUOROCYTOSINE
2
ACY
3
Ligand/Ion
ACETIC ACID
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
FE2
2
Ligand/Ion
FE (II) ION
5
FLC
-1
Ligand/Ion
CITRATE ANION
6
GOL
5
Ligand/Ion
GLYCEROL
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC6 (SOFTWARE)
03: CC4 (SOFTWARE)
04: DC5 (SOFTWARE)
05: DC6 (SOFTWARE)
06: DC7 (SOFTWARE)
07: DC8 (SOFTWARE)
08: DC9 (SOFTWARE)
09: EC1 (SOFTWARE)
10: EC2 (SOFTWARE)
11: EC3 (SOFTWARE)
12: EC4 (SOFTWARE)
13: FC3 (SOFTWARE)
14: FC7 (SOFTWARE)
15: FC8 (SOFTWARE)
16: FC9 (SOFTWARE)
17: GC1 (SOFTWARE)
18: GC2 (SOFTWARE)
19: GC3 (SOFTWARE)
20: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
SER A:156 , ASN A:183 , ARG D:229
BINDING SITE FOR RESIDUE EDO A 510
02
BC6
SOFTWARE
ARG B:185 , GLN B:217 , ARG B:219 , PHE B:220 , GLU B:222 , VAL B:223 , PEG B:505 , HOH B:611 , HOH B:709 , ARG F:185
BINDING SITE FOR RESIDUE GOL B 503
03
CC4
SOFTWARE
GLY B:171 , ASP B:173 , ARG B:204 , ASN D:159
BINDING SITE FOR RESIDUE EDO B 510
04
DC5
SOFTWARE
HIS D:58 , LEU D:76 , PHE D:149 , GLN D:151 , ILE D:178 , GLU D:212 , GLU D:273 , LEU D:277 , ASP D:308 , SER D:309 , TRP D:314 , FE2 D:502 , HOH D:608
BINDING SITE FOR RESIDUE 1LD D 501
05
DC6
SOFTWARE
HIS D:56 , HIS D:58 , HIS D:209 , HIS D:241 , ASP D:308 , 1LD D:501
BINDING SITE FOR RESIDUE FE2 D 502
06
DC7
SOFTWARE
GLU B:162 , ARG D:201
BINDING SITE FOR RESIDUE GOL D 503
07
DC8
SOFTWARE
ARG D:185 , GLN D:217 , ARG D:219 , PHE D:220 , GLU D:222 , VAL D:223 , HOH D:618 , HOH D:713
BINDING SITE FOR RESIDUE GOL D 504
08
DC9
SOFTWARE
ARG D:161 , ASP D:197
BINDING SITE FOR RESIDUE GOL D 505
09
EC1
SOFTWARE
ARG D:292
BINDING SITE FOR RESIDUE ACY D 506
10
EC2
SOFTWARE
ARG F:201
BINDING SITE FOR RESIDUE EDO D 507
11
EC3
SOFTWARE
ALA C:262 , SER D:156 , ASN D:183
BINDING SITE FOR RESIDUE EDO D 508
12
EC4
SOFTWARE
ILE D:168 , GLU D:169 , ARG D:204
BINDING SITE FOR RESIDUE EDO D 509
13
FC3
SOFTWARE
HIS E:180 , ILE E:213 , ASP E:215 , SER E:218 , HOH E:681 , TYR F:252 , LYS F:255
BINDING SITE FOR RESIDUE ACY E 508
14
FC7
SOFTWARE
ASP D:282 , PRO D:285 , ARG D:287 , PRO F:285 , ARG F:287
BINDING SITE FOR RESIDUE GOL F 501
15
FC8
SOFTWARE
HIS F:58 , LEU F:76 , PHE F:149 , GLN F:151 , GLU F:212 , GLU F:273 , ASP F:308 , SER F:309 , TRP F:314 , FE2 F:503 , HOH F:631
BINDING SITE FOR RESIDUE 1LD F 502
16
FC9
SOFTWARE
HIS F:56 , HIS F:58 , HIS F:209 , HIS F:241 , ASP F:308 , 1LD F:502
BINDING SITE FOR RESIDUE FE2 F 503
17
GC1
SOFTWARE
ARG F:185 , GLN F:217 , ARG F:219 , PHE F:220 , GLU F:222 , VAL F:223 , HOH F:604 , HOH F:703
BINDING SITE FOR RESIDUE GOL F 504
18
GC2
SOFTWARE
ARG F:292 , GLU F:295 , HOH F:715
BINDING SITE FOR RESIDUE ACY F 505
19
GC3
SOFTWARE
ARG F:161 , SER F:190 , MET F:193 , PHE F:194 , ASP F:197 , HOH F:762
BINDING SITE FOR RESIDUE ACY F 506
20
GC4
SOFTWARE
ASP D:327 , ALA D:328 , HIS D:331 , ASP F:327 , ALA F:328 , HIS F:331 , HOH F:754
BINDING SITE FOR RESIDUE PEG F 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (859 KB)
Header - Asym.Unit
Biol.Unit 1 (290 KB)
Header - Biol.Unit 1
Biol.Unit 2 (287 KB)
Header - Biol.Unit 2
Biol.Unit 3 (288 KB)
Header - Biol.Unit 3
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