Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-METHYLCYTOSINE
 
Authors :  A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date :  29 Aug 14  (Deposition) - 17 Sep 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,E  (1x)
Biol. Unit 4:  A,B,C,D,E,F  (1x)
Keywords :  Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Methylcytosine, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Methylcytosine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOSINE DEAMINASE
    Chains: A, B, C, D, E, F
    EC Number: 3.5.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: KPNJ1_03949
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 1420012
    Strain: 30660/NJST258_1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  B   F
Biological Unit 3 (1x):   C E 
Biological Unit 4 (1x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric Unit (3, 30)
No.NameCountTypeFull Name
117E6Ligand/Ion5-METHYLCYTOSINE
2FE26Ligand/IonFE (II) ION
3GOL18Ligand/IonGLYCEROL
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
117E2Ligand/Ion5-METHYLCYTOSINE
2FE22Ligand/IonFE (II) ION
3GOL5Ligand/IonGLYCEROL
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
117E2Ligand/Ion5-METHYLCYTOSINE
2FE22Ligand/IonFE (II) ION
3GOL7Ligand/IonGLYCEROL
Biological Unit 3 (3, 10)
No.NameCountTypeFull Name
117E2Ligand/Ion5-METHYLCYTOSINE
2FE22Ligand/IonFE (II) ION
3GOL6Ligand/IonGLYCEROL
Biological Unit 4 (3, 30)
No.NameCountTypeFull Name
117E6Ligand/Ion5-METHYLCYTOSINE
2FE26Ligand/IonFE (II) ION
3GOL18Ligand/IonGLYCEROL

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:58 , LEU A:76 , PHE A:149 , GLN A:151 , ILE A:178 , HIS A:209 , GLU A:212 , HIS A:241 , GLU A:273 , ASP A:308 , SER A:309 , TRP A:314 , FE2 A:502 , HOH A:601BINDING SITE FOR RESIDUE 17E A 501
02AC2SOFTWAREHIS A:56 , HIS A:58 , HIS A:209 , HIS A:241 , ASP A:308 , 17E A:501BINDING SITE FOR RESIDUE FE2 A 502
03AC3SOFTWAREARG A:185 , GLN A:217 , ARG A:219 , PHE A:220 , GLU A:222 , VAL A:223 , HOH A:647 , HOH A:669 , HOH A:715 , HOH A:746BINDING SITE FOR RESIDUE GOL A 503
04AC4SOFTWAREPRO A:123 , LEU A:125 , ARG A:166 , HOH A:833BINDING SITE FOR RESIDUE GOL A 504
05AC5SOFTWAREASP A:327 , ALA A:328 , HOH A:828 , HOH A:894 , ASP D:327 , ALA D:328 , HIS D:331BINDING SITE FOR RESIDUE GOL A 505
06AC6SOFTWAREHIS B:58 , LEU B:76 , PHE B:149 , GLN B:151 , ILE B:178 , HIS B:209 , GLU B:212 , HIS B:241 , GLU B:273 , ASP B:308 , SER B:309 , TRP B:314 , FE2 B:502 , HOH B:610BINDING SITE FOR RESIDUE 17E B 501
07AC7SOFTWAREHIS B:56 , HIS B:58 , HIS B:209 , HIS B:241 , ASP B:308 , 17E B:501BINDING SITE FOR RESIDUE FE2 B 502
08AC8SOFTWAREPRO B:92 , GLU B:93 , ALA B:130 , HOH B:670BINDING SITE FOR RESIDUE GOL B 503
09AC9SOFTWARESER B:254 , PHE B:257 , ARG B:292 , GLU B:295 , HOH B:611 , HOH B:662 , HOH B:747 , HOH B:785BINDING SITE FOR RESIDUE GOL B 504
10BC1SOFTWAREARG B:185 , GLN B:217 , ARG B:219 , PHE B:220 , GLU B:222 , VAL B:223 , HOH B:635 , HOH B:700 , HOH B:738 , HOH B:743BINDING SITE FOR RESIDUE GOL B 505
11BC2SOFTWAREGLN B:145 , ASP B:173 , LEU B:356 , CYS B:357BINDING SITE FOR RESIDUE GOL B 506
12BC3SOFTWAREHIS C:58 , LEU C:76 , PHE C:149 , GLN C:151 , ILE C:178 , HIS C:209 , GLU C:212 , HIS C:241 , GLU C:273 , ASP C:308 , SER C:309 , TRP C:314 , FE2 C:502 , HOH C:621BINDING SITE FOR RESIDUE 17E C 501
13BC4SOFTWAREHIS C:56 , HIS C:58 , HIS C:209 , HIS C:241 , ASP C:308 , 17E C:501BINDING SITE FOR RESIDUE FE2 C 502
14BC5SOFTWAREASP C:327 , ALA C:328 , ASP E:327 , ALA E:328 , HIS E:331 , HOH E:882BINDING SITE FOR RESIDUE GOL C 503
15BC6SOFTWAREARG C:185 , GLN C:217 , ARG C:219 , PHE C:220 , GLU C:222 , VAL C:223 , HOH C:645 , HOH C:801BINDING SITE FOR RESIDUE GOL C 504
16BC7SOFTWARESER C:254 , PHE C:257 , ARG C:292 , GLU C:295 , HOH C:618 , HOH C:647 , HOH E:706BINDING SITE FOR RESIDUE GOL C 505
17BC8SOFTWAREHIS D:58 , LEU D:76 , PHE D:149 , GLN D:151 , ILE D:178 , GLU D:212 , HIS D:241 , GLU D:273 , ASP D:308 , SER D:309 , TRP D:314 , FE2 D:502 , HOH D:604BINDING SITE FOR RESIDUE 17E D 501
18BC9SOFTWAREHIS D:56 , HIS D:58 , HIS D:209 , HIS D:241 , ASP D:308 , 17E D:501BINDING SITE FOR RESIDUE FE2 D 502
19CC1SOFTWARESER D:254 , PHE D:257 , ARG D:292 , GLU D:295 , HOH D:618 , HOH D:625 , HOH D:783BINDING SITE FOR RESIDUE GOL D 503
20CC2SOFTWAREARG D:185 , GLN D:217 , ARG D:219 , PHE D:220 , GLU D:222 , VAL D:223 , HOH D:645 , HOH D:666 , HOH D:707 , HOH D:740BINDING SITE FOR RESIDUE GOL D 504
21CC3SOFTWAREHIS E:58 , LEU E:76 , PHE E:149 , GLN E:151 , ILE E:178 , GLU E:212 , HIS E:241 , GLU E:273 , ASP E:308 , SER E:309 , TRP E:314 , FE2 E:502 , HOH E:617BINDING SITE FOR RESIDUE 17E E 501
22CC4SOFTWAREHIS E:56 , HIS E:58 , HIS E:209 , HIS E:241 , ASP E:308 , 17E E:501BINDING SITE FOR RESIDUE FE2 E 502
23CC5SOFTWAREARG E:185 , GLN E:217 , ARG E:219 , PHE E:220 , GLU E:222 , VAL E:223 , HOH E:618 , HOH E:751 , HOH E:764BINDING SITE FOR RESIDUE GOL E 503
24CC6SOFTWARESER E:254 , PHE E:257 , ARG E:292 , GLU E:295 , HOH E:619 , HOH E:776 , HOH E:802BINDING SITE FOR RESIDUE GOL E 504
25CC7SOFTWAREHIS E:113 , ASP E:143 , ASN E:361 , PRO E:369 , ASN E:371 , ARG E:395 , HIS E:396 , HOH E:841BINDING SITE FOR RESIDUE GOL E 505
26CC8SOFTWAREASP B:327 , ALA B:328 , HIS B:331 , ASP F:327 , ALA F:328 , HOH F:878BINDING SITE FOR RESIDUE GOL F 501
27CC9SOFTWAREHIS F:58 , LEU F:76 , PHE F:149 , GLN F:151 , ILE F:178 , HIS F:209 , GLU F:212 , HIS F:241 , GLU F:273 , ASP F:308 , SER F:309 , TRP F:314 , FE2 F:503 , HOH F:620BINDING SITE FOR RESIDUE 17E F 502
28DC1SOFTWAREHIS F:56 , HIS F:58 , HIS F:209 , HIS F:241 , ASP F:308 , 17E F:502BINDING SITE FOR RESIDUE FE2 F 503
29DC2SOFTWAREARG F:185 , GLN F:217 , ARG F:219 , PHE F:220 , GLU F:222 , VAL F:223 , HOH F:650 , HOH F:793BINDING SITE FOR RESIDUE GOL F 504
30DC3SOFTWAREHOH B:705 , SER F:254 , PHE F:257 , ARG F:292 , GLU F:295 , HOH F:631BINDING SITE FOR RESIDUE GOL F 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R85)

(-) Cis Peptide Bonds  (14, 14)

Asymmetric Unit
No.Residues
1Glu A:67 -Pro A:68
2Trp A:284 -Pro A:285
3Glu B:67 -Pro B:68
4Trp B:284 -Pro B:285
5Pro B:411 -Ala B:412
6Glu C:67 -Pro C:68
7Trp C:284 -Pro C:285
8Pro C:411 -Ala C:412
9Glu D:67 -Pro D:68
10Trp D:284 -Pro D:285
11Glu E:67 -Pro E:68
12Trp E:284 -Pro E:285
13Glu F:67 -Pro F:68
14Trp F:284 -Pro F:285

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R85)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R85)

(-) Exons   (0, 0)

(no "Exon" information available for 4R85)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee...........ee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r85 A   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain B from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......eeeeeee..eeeeeeee.........eee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhh...ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r85 B   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA 412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  


Chain C from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeee..eeeeeee...........ee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r85 C   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA 412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  


Chain D from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee...........ee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r85 D   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain E from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeee..eeeeeee...........ee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhh...ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhh.hhh.eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeee.....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r85 E   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYP 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain F from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeee..eeeeeee...........ee....eee..eeeeee.................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeeee.....hhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhhh..ee..hhhhh.hhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhh.............hhhhhhhh...eee...............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhh.........eeee...hhhhhhhhh..eeeeee..eeeeee....ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r85 F   1 MKIINARLRRQEALFTLDLQDGIIHRITAQAAMQTADAGAIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALQALLAVKQEAADLIDLQIVAFPQEGIESYPNGRELMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA 412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R85)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R85)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R85)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4R85)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    17E  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE2  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:67 - Pro A:68   [ RasMol ]  
    Glu B:67 - Pro B:68   [ RasMol ]  
    Glu C:67 - Pro C:68   [ RasMol ]  
    Glu D:67 - Pro D:68   [ RasMol ]  
    Glu E:67 - Pro E:68   [ RasMol ]  
    Glu F:67 - Pro F:68   [ RasMol ]  
    Pro B:411 - Ala B:412   [ RasMol ]  
    Pro C:411 - Ala C:412   [ RasMol ]  
    Trp A:284 - Pro A:285   [ RasMol ]  
    Trp B:284 - Pro B:285   [ RasMol ]  
    Trp C:284 - Pro C:285   [ RasMol ]  
    Trp D:284 - Pro D:285   [ RasMol ]  
    Trp E:284 - Pro E:285   [ RasMol ]  
    Trp F:284 - Pro F:285   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4r85
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A0A0E1CHI1_K | A0A0E1CHI1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  3.5.4.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A0A0E1CHI1_K | A0A0E1CHI1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0E1CHI1_K | A0A0E1CHI1: 4r7w 4r88

(-) Related Entries Specified in the PDB File

4r7w THE SAME PROTEIN COMPLEXED WITH PHOSPHOCYTOSINE
4r88