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(-) Description

Title :  CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII SELECASE MUTANT I100F+H107F
 
Authors :  M. Lopez-Pelegrin, N. Cerda-Costa, A. Cintas-Pedrola, F. Herranz-Tr P. Bernado, J. R. Peinado, J. L. Arolas, F. X. Gomis-Ruth
Date :  28 May 14  (Deposition) - 16 Jul 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Minigluzincin, Proteolytic Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lopez-Pelegrin, N. Cerda-Costa, A. Cintas-Pedrola, F. Herranz-Trillo, P. Bernado, J. R. Peinado, J. L. Arolas, F. X. Gomis-Ruth
Multiple Stable Conformations Account For Reversible Concentration-Dependent Oligomerization And Autoinhibition Of A Metamorphic Metallopeptidase
Angew. Chem. Int. Ed. Engl. V. 53 10624 2014
PubMed-ID: 25159620  |  Reference-DOI: 10.1002/ANIE.201405727

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN MJ1213
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ1213
    Mutation: YES
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 243232
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2GOL1Ligand/IonGLYCEROL
3ZN2Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:69 , HIS A:73 , HIS A:80 , ACT A:202BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREHIS A:69 , HIS A:73 , HIS A:80 , ZN A:201 , HOH A:311 , HOH A:342 , PHE B:100 , ASN B:101BINDING SITE FOR RESIDUE ACT A 202
3AC3SOFTWAREALA A:39 , GLU A:70 , HIS A:73 , HOH A:356 , HOH A:408BINDING SITE FOR RESIDUE ACT A 203
4AC4SOFTWAREGLU A:9 , ILE A:10 , ARG A:64 , HOH A:343 , HOH A:345BINDING SITE FOR RESIDUE ACT A 204
5AC5SOFTWAREHIS B:69 , HIS B:73 , HIS B:80 , ACT B:202BINDING SITE FOR RESIDUE ZN B 201
6AC6SOFTWAREPHE A:100 , HIS B:69 , HIS B:73 , HIS B:80 , ZN B:201 , GOL B:204 , HOH B:428BINDING SITE FOR RESIDUE ACT B 202
7AC7SOFTWAREILE B:6 , GLU B:9 , ARG B:64 , HOH B:319 , HOH B:396 , HOH B:427BINDING SITE FOR RESIDUE ACT B 203
8AC8SOFTWAREALA B:39 , SER B:40 , ILE B:41 , HIS B:69 , GLU B:70 , HIS B:73 , ACT B:202 , HOH B:340 , HOH B:361 , HOH B:428BINDING SITE FOR RESIDUE GOL B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QHJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QHJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QHJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QHJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QHJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhh...eeeee......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4qhj A   1 MKDRKILNEILSNTINELNLNDKKANIKIKIKPLKRKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILFNLINKLFQ 108
                                    10        20        30        40        50        60        70        80        90       100        


Chain B from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhh...eeeee......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4qhj B   1 MKDRKILNEILSNTINELNLNDKKANIKIKIKPLKRKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILFNLINKLFQ 108
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QHJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QHJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QHJ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4QHJ)

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  Cis Peptide Bonds
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  4qhj
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  Y1213_METJA | Q58610
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y1213_METJA | Q58610: 4qhf 4qhg 4qhh 4qhi

(-) Related Entries Specified in the PDB File

4jiu PYROCOCCUS ABYSSI ABYLYSIN
4jix METHANOCALDOCOCCUS JANNASCHII JANNALYSIN
4qhf METHANOCALDOCOCCUS JANNASCHII MONOMERIC SELECASE
4qhg METHANOCALDOCOCCUS JANNASCHII DIMERIC SELECASE
4qhh METHANOCALDOCOCCUS JANNASCHII TETRAMERIC SELECASE
4qhi METHANOCALDOCOCCUS JANNASCHII SELECASE MUTANT R36W