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(-) Description

Title :  CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII SELECASE MUTANT R36W
 
Authors :  M. Lopez-Pelegrin, N. Cerda-Costa, A. Cintas-Pedrola, F. Herranz-Tr P. Bernado, J. R. Peinado, J. L. Arolas, F. X. Gomis-Ruth
Date :  28 May 14  (Deposition) - 16 Jul 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Minigluzincin, Proteolytic Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lopez-Pelegrin, N. Cerda-Costa, A. Cintas-Pedrola, F. Herranz-Trillo, P. Bernado, J. R. Peinado, J. L. Arolas, F. X. Gomis-Ruth
Multiple Stable Conformations Account For Reversible Concentration-Dependent Oligomerization And Autoinhibition Of A Metamorphic Metallopeptidase
Angew. Chem. Int. Ed. Engl. V. 53 10624 2014
PubMed-ID: 25159620  |  Reference-DOI: 10.1002/ANIE.201405727

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN MJ1213
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ1213
    Mutation: YES
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 243232
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:69 , HIS A:73 , HIS A:80 , GOL A:202BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREALA A:39 , ILE A:41 , HIS A:69 , GLU A:70 , HIS A:73 , HIS A:80 , ZN A:201 , HOH A:323 , PRO B:56BINDING SITE FOR RESIDUE GOL A 202
3AC3SOFTWARELYS A:32BINDING SITE FOR RESIDUE CL A 203
4AC4SOFTWAREHIS B:69 , HIS B:73 , HIS B:80 , HIS B:107BINDING SITE FOR RESIDUE ZN B 201
5AC5SOFTWARELYS B:78 , TYR B:79 , HIS B:80 , GLU C:83BINDING SITE FOR RESIDUE GOL B 202
6AC6SOFTWAREGLU B:86 , GLU B:87 , PHE B:90BINDING SITE FOR RESIDUE GOL B 203
7AC7SOFTWAREHIS C:69 , HIS C:73 , HIS C:80 , GOL C:202BINDING SITE FOR RESIDUE ZN C 201
8AC8SOFTWAREALA C:39 , ILE C:41 , HIS C:69 , GLU C:70 , HIS C:73 , ZN C:201 , PRO D:56 , TYR D:57BINDING SITE FOR RESIDUE GOL C 202
9AC9SOFTWAREHIS D:69 , HIS D:73 , HIS D:80 , HIS D:107BINDING SITE FOR RESIDUE ZN D 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QHI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QHI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QHI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QHI)

(-) Exons   (0, 0)

(no "Exon" information available for 4QHI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........eeeee......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4qhi A   2 KDRKILNEILSNTINELNLNDKKANIKIKIKPLKWKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILINLINKLHQK 109
                                    11        21        31        41        51        61        71        81        91       101        


Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.........eeeee......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4qhi B   1 MKDRKILNEILSNTINELNLNDKKANIKIKIKPLKWKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILINLINKLHQK 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain C from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh...eeeee......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4qhi C   4 RKILNEILSNTINELNLNDKKANIKIKIKPLKWKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILINLINKLHQK 109
                                    13        23        33        43        53        63        73        83        93       103      


Chain D from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhh.eeeee......eee.....eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 4qhi D   3 DRKILNEILSNTINELNLNDKKANIKIKIKPLKWKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILINLINKLHQK 109
                                    12        22        32        42        52        62        72        82        92       102
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QHI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QHI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QHI)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4QHI)

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  Y1213_METJA | Q58610
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y1213_METJA | Q58610: 4qhf 4qhg 4qhh 4qhj

(-) Related Entries Specified in the PDB File

4jiu PYROCOCCUS ABYSSI ABYLYSIN
4jix METHANOCALDOCOCCUS JANNASCHII JANNALYSIN
4qhf METHANOCALDOCOCCUS JANNASCHII MONOMERIC SELECASE
4qhg METHANOCALDOCOCCUS JANNASCHII DIMERIC SELECASE
4qhh METHANOCALDOCOCCUS JANNASCHII TETRAMERIC SELECASE
4qhj METHANOCALDOCOCCUS JANNASCHII SELECASE MUTANT I100F+H107F