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(-) Description

Title :  CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII TETRAMERIC SELECASE
 
Authors :  M. Lopez-Pelegrin, N. Cerda-Costa, A. Cintas-Pedrola, F. Herranz-Tr P. Bernado, J. R. Peinado, J. L. Arolas, F. X. Gomis-Ruth
Date :  28 May 14  (Deposition) - 16 Jul 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Minigluzincin, Proteolytic Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lopez-Pelegrin, N. Cerda-Costa, A. Cintas-Pedrola, F. Herranz-Trillo, P. Bernado, J. R. Peinado, J. L. Arolas, F. X. Gomis-Ruth
Multiple Stable Conformations Account For Reversible Concentration-Dependent Oligomerization And Autoinhibition Of A Metamorphic Metallopeptidase
Angew. Chem. Int. Ed. Engl. V. 53 10624 2014
PubMed-ID: 25159620  |  Reference-DOI: 10.1002/ANIE.201405727

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN MJ1213
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ1213
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 243232
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2NA1Ligand/IonSODIUM ION
3ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1GOL16Ligand/IonGLYCEROL
2NA-1Ligand/IonSODIUM ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:69 , HIS A:73 , GOL A:204 , GOL A:206BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREASN A:16 , ASN A:19 , GOL A:205 , HOH A:301BINDING SITE FOR RESIDUE NA A 202
3AC3SOFTWAREARG A:4 , LYS A:28 , LYS A:30BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREHIS A:69 , GLU A:70 , PHE A:92 , LYS A:95 , ZN A:201 , GOL A:206BINDING SITE FOR RESIDUE GOL A 204
5AC5SOFTWAREASN A:16 , ASN A:19 , NA A:202BINDING SITE FOR RESIDUE GOL A 205
6AC6SOFTWAREZN A:201 , GOL A:204BINDING SITE FOR RESIDUE GOL A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QHH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QHH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4QHH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhh.eeeee......eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhh.eeee......eeee..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4qhh A   2 KDRKILNEILSNTINELNLNDKKANIKIKIKPLKRKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILINLINKLHQK 109
                                    11        21        31        41        51        61        71        81        91       101
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QHH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QHH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QHH)

(-) Gene Ontology  (0, 0)

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  4qhh
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  Y1213_METJA | Q58610
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y1213_METJA | Q58610: 4qhf 4qhg 4qhi 4qhj

(-) Related Entries Specified in the PDB File

4jiu PYROCOCCUS ABYSSI ABYLYSIN
4jix METHANOCALDOCOCCUS JANNASCHII JANNALYSIN
4qhf METHANOCALDOCOCCUS JANNASCHII MONOMERIC SELECASE
4qhg METHANOCALDOCOCCUS JANNASCHII DIMERIC SELECASE
4qhi METHANOCALDOCOCCUS JANNASCHII SELECASE MUTANT R36W
4qhj METHANOCALDOCOCCUS JANNASCHII SELECASE MUTANT I100F+H107F