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(-) Description

Title :  STRUCTURE OF UNLIGANDED B-LYMPHOTROPIC POLYOMAVIRUS VP1
 
Authors :  Z. M. Khan, U. Neu, B. Schuch, T. Stehle
Date :  21 Aug 13  (Deposition) - 04 Dec 13  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly Roll, Polyomavirus, Viral Capsid (Structural) Protein, Dna Encapsidation, Receptor Binding, Sialylated Oligosaccharides, Viral Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Neu, Z. M. Khan, B. Schuch, A. S. Palma, Y. Liu, M. Pawlita, T. Feizi, T. Stehle
Structures Of B-Lymphotropic Polyomavirus Vp1 In Complex With Oligosaccharide Ligands.
Plos Pathog. V. 9 03714 2013
PubMed-ID: 24204265  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003714

(-) Compounds

Molecule 1 - MAJOR CAPSID PROTEIN VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VP1
    Organism Scientific: B-LYMPHOTROPIC POLYOMAVIRUS
    Organism Taxid: 332091

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 37)

Asymmetric Unit (2, 37)
No.NameCountTypeFull Name
1CA10Ligand/IonCALCIUM ION
2EDO27Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 13)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO13Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO14Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (37, 37)

Asymmetric Unit (37, 37)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:46 , HOH A:700 , HOH A:731 , SER B:214BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREGLU A:217 , ASN A:218 , ARG A:220 , ASP A:247 , GLY A:252 , HOH A:695 , MET F:27BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWAREGLN A:44 , SER A:114 , VAL A:115 , THR A:242 , ASN A:288 , THR A:290 , HOH A:710BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREALA A:47 , TYR A:48 , HOH A:661BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREGLU B:46 , HOH B:660 , SER C:214 , GLU C:217 , HOH C:671BINDING SITE FOR RESIDUE CA B 401
06AC6SOFTWAREGLU B:217 , ASN B:218 , ARG B:220 , ASP B:247 , GLY B:252 , PRO B:253 , HOH B:693 , MET J:27BINDING SITE FOR RESIDUE EDO B 402
07AC7SOFTWARETHR B:149 , HIS B:151 , PRO B:233 , VAL B:234 , MET B:235 , HOH B:604BINDING SITE FOR RESIDUE EDO B 403
08AC8SOFTWAREGLU C:46 , HOH C:679 , SER D:214 , HOH D:683BINDING SITE FOR RESIDUE CA C 401
09AC9SOFTWAREVAL C:119 , MET C:235 , GLN C:236 , HOH C:636BINDING SITE FOR RESIDUE EDO C 402
10BC1SOFTWAREGLU D:46 , HOH D:663 , SER E:214 , HOH E:702BINDING SITE FOR RESIDUE CA D 401
11BC2SOFTWARESER D:114 , VAL D:115 , LYS D:116 , THR D:242 , ASN D:288 , VAL D:289 , THR D:290BINDING SITE FOR RESIDUE EDO D 402
12BC3SOFTWARELYS D:116 , ASN D:239 , HOH D:579 , GLU E:217 , ARG E:220 , HOH E:534BINDING SITE FOR RESIDUE EDO D 403
13BC4SOFTWARESER A:214 , GLU A:217 , HOH A:726 , HOH A:732 , GLU E:46 , HOH E:652BINDING SITE FOR RESIDUE CA E 401
14BC5SOFTWAREGLN E:44 , SER E:114 , VAL E:115 , THR E:242 , ASN E:288 , VAL E:289 , THR E:290 , HOH E:603BINDING SITE FOR RESIDUE EDO E 402
15BC6SOFTWAREGLU D:31 , ASN E:249 , GLY E:250 , ARG E:294 , HOH E:692 , GLY G:29BINDING SITE FOR RESIDUE EDO E 403
16BC7SOFTWAREARG A:220 , ASP A:247 , GLU A:248 , LYS E:116 , ASN E:239 , HOH E:573BINDING SITE FOR RESIDUE EDO E 404
17BC8SOFTWAREVAL E:119 , MET E:235 , GLN E:236 , HOH E:690 , HOH E:698BINDING SITE FOR RESIDUE EDO E 405
18BC9SOFTWAREGLU E:217 , ASN E:218 , ARG E:220 , ASP E:247 , GLY E:252 , MET G:27BINDING SITE FOR RESIDUE EDO E 406
19CC1SOFTWAREGLU F:46 , HOH F:630 , SER G:214 , GLU G:217 , HOH G:634BINDING SITE FOR RESIDUE CA F 401
20CC2SOFTWAREMET A:27 , GLU F:217 , ASN F:218 , ARG F:220 , ASP F:247 , GLY F:252 , PRO F:253BINDING SITE FOR RESIDUE EDO F 402
21CC3SOFTWAREGLN F:44 , SER F:114 , LYS F:116 , THR F:242 , ASN F:288 , THR F:290 , HOH F:636BINDING SITE FOR RESIDUE EDO F 403
22CC4SOFTWARELEU F:62 , ASN F:67 , SER F:68 , HOH F:619BINDING SITE FOR RESIDUE EDO F 404
23CC5SOFTWAREASN F:239 , HOH F:623 , ASN G:216 , ARG G:220 , HOH G:539BINDING SITE FOR RESIDUE EDO F 405
24CC6SOFTWAREGLU G:46 , SER H:214 , HOH H:501 , HOH H:649BINDING SITE FOR RESIDUE CA G 401
25CC7SOFTWAREGLN G:44 , SER G:114 , VAL G:115 , LYS G:116 , THR G:242 , ASN G:288 , THR G:290 , HOH G:613BINDING SITE FOR RESIDUE EDO G 402
26CC8SOFTWAREVAL G:119 , HIS G:151 , MET G:235 , GLN G:236 , HOH G:663BINDING SITE FOR RESIDUE EDO G 403
27CC9SOFTWAREGLY E:29 , GLU F:31 , LEU F:33 , GLU G:111 , GLY G:250 , ARG G:292 , ARG G:294BINDING SITE FOR RESIDUE EDO G 404
28DC1SOFTWAREGLU G:217 , ASN G:218 , ARG G:220 , ASP G:247 , GLY G:252BINDING SITE FOR RESIDUE EDO G 405
29DC2SOFTWARETYR G:48 , ASN G:50 , ARG G:52 , HOH G:656BINDING SITE FOR RESIDUE EDO G 406
30DC3SOFTWAREGLU H:46 , HOH H:648 , SER I:214 , HOH I:609BINDING SITE FOR RESIDUE CA H 401
31DC4SOFTWAREGLY C:29 , GLU H:31 , LEU H:33 , GLY I:250 , VAL I:251 , ARG I:294BINDING SITE FOR RESIDUE EDO H 402
32DC5SOFTWAREGLU I:46 , HOH I:666 , SER J:214 , HOH J:671BINDING SITE FOR RESIDUE CA I 401
33DC6SOFTWAREGLN I:44 , SER I:114 , VAL I:115 , LYS I:116 , THR I:242 , ASN I:288 , THR I:290BINDING SITE FOR RESIDUE EDO I 402
34DC7SOFTWARELYS I:116 , ASN I:239 , HOH I:643 , HOH I:677 , ASN J:216 , GLU J:217 , ARG J:220BINDING SITE FOR RESIDUE EDO I 403
35DC8SOFTWARESER F:214 , HOH F:687 , GLU J:46 , HOH J:669BINDING SITE FOR RESIDUE CA J 401
36DC9SOFTWAREGLY B:29 , GLU I:31 , LEU I:33 , ASN J:249 , GLY J:250 , VAL J:251 , ARG J:294 , HOH J:620BINDING SITE FOR RESIDUE EDO J 402
37EC1SOFTWARETYR F:134 , TYR F:274 , SER F:275 , GLU F:276 , GLY J:137 , SER J:138 , SER J:139BINDING SITE FOR RESIDUE EDO J 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MBX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MBX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MBX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MBX)

(-) Exons   (0, 0)

(no "Exon" information available for 4MBX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4mbxa_ A: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mbx A  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPYP 301
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       


Chain B from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4mbxb_ B: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mbx B  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPY 300
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294      


Chain C from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4mbxc_ C: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mbx C  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPY 300
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294      


Chain D from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mbxd_ D: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mbx D  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP 299
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294     


Chain E from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4mbxe_ E: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mbx E  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPYP 301
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       


Chain F from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mbxf_ F: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mbx F  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKN 298
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294    


Chain G from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4mbxg_ G: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee.........eeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mbx G  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVK 297
                                    34        44        54        64        74        84        94   ||  107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297
                                                                                                    98|                                                                                                                                                                                                   
                                                                                                    102                                                                                                                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mbxh_ H: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mbx H  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKN 298
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294    


Chain I from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mbxi_ I: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mbx I  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP 299
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294     


Chain J from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4mbxj_ J: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mbx J  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPY 300
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MBX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MBX)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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  4mbx
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  VP1_POVLY | P04010
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 Related Entries

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        VP1_POVLY | P04010: 4mby 4mbz

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4mby 4mbz