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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUN1A/GLUN2B NMDA RECEPTOR ION CHANNEL
 
Authors :  E. Karakas, H. Furukawa
Date :  22 Apr 14  (Deposition) - 04 Jun 14  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.96
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nmda Receptor, Glun1, Glun2B, Ion Channel, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Karakas, H. Furukawa
Crystal Structure Of A Heterotetrameric Nmda Receptor Ion Channel.
Science V. 344 992 2014
PubMed-ID: 24876489  |  Reference-DOI: 10.1126/SCIENCE.1251915

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1
    Chains: A, C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 23-847
    Gene: GRIN1, NMDAR1
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUN1,GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1,N-METHYL-D- ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1
 
Molecule 2 - GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2B
    Chains: B, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 27-852
    Gene: GRIN2B
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUN2B,GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-2,N-METHYL D-ASPARTATE RECEPTOR SUBTYPE 2B,NR2B

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 124)

Asymmetric/Biological Unit (7, 124)
No.NameCountTypeFull Name
1BMA5Ligand/IonBETA-D-MANNOSE
2GLU2Mod. Amino AcidGLUTAMIC ACID
3GLY2Mod. Amino AcidGLYCINE
4MAN9Ligand/IonALPHA-D-MANNOSE
5NAG20Ligand/IonN-ACETYL-D-GLUCOSAMINE
6QEL2Ligand/Ion4-[(1R,2S)-2-(4-BENZYLPIPERIDIN-1-YL)-1-HYDROXYPROPYL]PHENOL
7W84Ligand/IonTUNGSTEN ION

(-) Sites  (104, 104)

Asymmetric Unit (104, 104)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREW A:902 , W A:905 , W A:906 , W A:910 , W B:904 , W B:905binding site for residue W A 901
002AC2SOFTWAREW A:901 , W A:903 , W A:907 , W A:910 , W A:937 , W B:903 , W B:904binding site for residue W A 902
003AC3SOFTWAREW A:902 , W A:904 , W A:905 , W A:907 , W A:937 , W B:901 , W B:902 , W B:904binding site for residue W A 903
004AC4SOFTWAREW A:903 , W A:905 , W A:911 , W A:912binding site for residue W A 904
005AC5SOFTWAREW A:901 , W A:903 , W A:904 , W A:906 , W B:901 , W B:904binding site for residue W A 905
006AC6SOFTWAREW A:901 , W A:905 , W A:909 , W A:912binding site for residue W A 906
007AC7SOFTWAREW A:902 , W A:903 , W A:908 , W A:911binding site for residue W A 907
008AC8SOFTWAREW A:907 , W A:909 , W A:910 , W A:911binding site for residue W A 908
009AC9SOFTWAREW A:906 , W A:908 , W A:910 , W A:912binding site for residue W A 909
010AD1SOFTWAREW A:901 , W A:902 , W A:908 , W A:909binding site for residue W A 910
011AD2SOFTWAREW A:904 , W A:907 , W A:908 , W A:912binding site for residue W A 911
012AD3SOFTWAREW A:904 , W A:906 , W A:909 , W A:911binding site for residue W A 912
013AD4SOFTWAREW A:914 , W A:917 , W A:918 , W A:922binding site for residue W A 913
014AD5SOFTWAREW A:913 , W A:915 , W A:919 , W A:922binding site for residue W A 914
015AD6SOFTWAREW A:914 , W A:916 , W A:917 , W A:919binding site for residue W A 915
016AD7SOFTWAREW A:915 , W A:917 , W A:923 , W A:924binding site for residue W A 916
017AD8SOFTWAREW A:913 , W A:915 , W A:916 , W A:918binding site for residue W A 917
018AD9SOFTWAREW A:913 , W A:917 , W A:921 , W A:924binding site for residue W A 918
019AE1SOFTWAREW A:914 , W A:915 , W A:920 , W A:923binding site for residue W A 919
020AE2SOFTWAREW A:919 , W A:921 , W A:922 , W A:923binding site for residue W A 920
021AE3SOFTWAREW A:918 , W A:920 , W A:922 , W A:924binding site for residue W A 921
022AE4SOFTWAREW A:913 , W A:914 , W A:920 , W A:921binding site for residue W A 922
023AE5SOFTWAREW A:916 , W A:919 , W A:920 , W A:924binding site for residue W A 923
024AE6SOFTWAREW A:916 , W A:918 , W A:921 , W A:923binding site for residue W A 924
025AE7SOFTWAREW A:926 , W A:929 , W A:930 , W A:934binding site for residue W A 925
026AE8SOFTWAREW A:925 , W A:927 , W A:931 , W A:934binding site for residue W A 926
027AE9SOFTWAREW A:926 , W A:928 , W A:929 , W A:931binding site for residue W A 927
028AF1SOFTWAREW A:927 , W A:929 , W A:935 , W A:936binding site for residue W A 928
029AF2SOFTWAREW A:925 , W A:927 , W A:928 , W A:930binding site for residue W A 929
030AF3SOFTWAREW A:925 , W A:929 , W A:933 , W A:936binding site for residue W A 930
031AF4SOFTWAREW A:926 , W A:927 , W A:932 , W A:935binding site for residue W A 931
032AF5SOFTWAREW A:931 , W A:933 , W A:934 , W A:935binding site for residue W A 932
033AF6SOFTWAREW A:930 , W A:932 , W A:934 , W A:936binding site for residue W A 933
034AF7SOFTWAREW A:925 , W A:926 , W A:932 , W A:933binding site for residue W A 934
035AF8SOFTWAREW A:928 , W A:931 , W A:932 , W A:936binding site for residue W A 935
036AF9SOFTWAREW A:928 , W A:930 , W A:933 , W A:935binding site for residue W A 936
037AG1SOFTWAREW A:902 , W A:903 , W B:902 , W B:903 , W B:904 , W B:906binding site for residue W A 937
038AG2SOFTWAREPHE A:484 , PRO A:516 , LEU A:517 , THR A:518 , ARG A:523 , SER A:688 , TRP A:731 , ASP A:732 , PHE A:758binding site for residue GLY A 942
039AG3SOFTWAREW A:903 , W A:905 , W B:902 , W B:904 , W B:905 , W B:909binding site for residue W B 901
040AG4SOFTWAREW A:903 , W A:937 , W B:901 , W B:906 , W B:909binding site for residue W B 902
041AG5SOFTWAREW A:902 , W A:937 , W B:904 , W B:910 , W B:911binding site for residue W B 903
042AG6SOFTWAREW A:901 , W A:902 , W A:903 , W A:905 , W A:937 , W B:901 , W B:903 , W B:905binding site for residue W B 904
043AG7SOFTWAREW A:901 , W B:901 , W B:904 , W B:908 , W B:911binding site for residue W B 905
044AG8SOFTWAREW A:937 , W B:902 , W B:907 , W B:910binding site for residue W B 906
045AG9SOFTWAREW B:906 , W B:908 , W B:909 , W B:910binding site for residue W B 907
046AH1SOFTWAREW B:905 , W B:907 , W B:909 , W B:911binding site for residue W B 908
047AH2SOFTWAREW B:901 , W B:902 , W B:907 , W B:908binding site for residue W B 909
048AH3SOFTWAREW B:903 , W B:906 , W B:907 , W B:911binding site for residue W B 910
049AH4SOFTWAREW B:903 , W B:905 , W B:908 , W B:910binding site for residue W B 911
050AH5SOFTWARETYR A:109 , THR A:110 , ARG A:115 , SER A:132 , ILE A:133 , LEU A:135 , GLN B:110 , ILE B:111 , PHE B:114 , PHE B:176 , PRO B:177 , GLU B:236binding site for residue QEL B 920
051AH6SOFTWAREHIS B:486 , SER B:512 , LEU B:513 , THR B:514 , ARG B:519 , GLY B:689 , SER B:690 , THR B:691 , TYR B:731 , ASP B:732 , TYR B:762binding site for residue GLU B 921
052AH7SOFTWAREW C:902 , W C:905 , W C:906 , W C:910binding site for residue W C 901
053AH8SOFTWAREW C:901 , W C:903 , W C:907 , W C:910binding site for residue W C 902
054AH9SOFTWAREW C:902 , W C:904 , W C:905 , W C:907binding site for residue W C 903
055AI1SOFTWAREW C:903 , W C:905 , W C:911 , W C:912binding site for residue W C 904
056AI2SOFTWAREW C:901 , W C:903 , W C:904 , W C:906binding site for residue W C 905
057AI3SOFTWAREW C:901 , W C:905 , W C:909 , W C:912binding site for residue W C 906
058AI4SOFTWAREW C:902 , W C:903 , W C:908 , W C:911binding site for residue W C 907
059AI5SOFTWAREW C:907 , W C:909 , W C:910 , W C:911binding site for residue W C 908
060AI6SOFTWAREW C:906 , W C:908 , W C:910 , W C:912binding site for residue W C 909
061AI7SOFTWAREW C:901 , W C:902 , W C:908 , W C:909binding site for residue W C 910
062AI8SOFTWAREW C:904 , W C:907 , W C:908 , W C:912binding site for residue W C 911
063AI9SOFTWAREW C:904 , W C:906 , W C:909 , W C:911binding site for residue W C 912
064AJ1SOFTWAREW C:914 , W C:917 , W C:918 , W C:922binding site for residue W C 913
065AJ2SOFTWAREW C:913 , W C:915 , W C:919 , W C:922binding site for residue W C 914
066AJ3SOFTWAREW C:914 , W C:916 , W C:917 , W C:919binding site for residue W C 915
067AJ4SOFTWAREW C:915 , W C:917 , W C:923 , W C:924binding site for residue W C 916
068AJ5SOFTWAREW C:913 , W C:915 , W C:916 , W C:918binding site for residue W C 917
069AJ6SOFTWAREW C:913 , W C:917 , W C:921 , W C:924binding site for residue W C 918
070AJ7SOFTWAREW C:914 , W C:915 , W C:920 , W C:923binding site for residue W C 919
071AJ8SOFTWAREW C:919 , W C:921 , W C:922 , W C:923binding site for residue W C 920
072AJ9SOFTWAREW C:918 , W C:920 , W C:922 , W C:924 , W C:931binding site for residue W C 921
073AK1SOFTWAREW C:913 , W C:914 , W C:920 , W C:921binding site for residue W C 922
074AK2SOFTWAREW C:916 , W C:919 , W C:920 , W C:924 , W C:928 , W C:935binding site for residue W C 923
075AK3SOFTWAREW C:916 , W C:918 , W C:921 , W C:923 , W C:927 , W C:928binding site for residue W C 924
076AK4SOFTWAREW C:926 , W C:929 , W C:930 , W C:934binding site for residue W C 925
077AK5SOFTWAREW C:925 , W C:927 , W C:931 , W C:934binding site for residue W C 926
078AK6SOFTWAREW C:924 , W C:926 , W C:928 , W C:929 , W C:931binding site for residue W C 927
079AK7SOFTWAREW C:923 , W C:924 , W C:927 , W C:929 , W C:935 , W C:936binding site for residue W C 928
080AK8SOFTWAREW C:925 , W C:927 , W C:928 , W C:930binding site for residue W C 929
081AK9SOFTWAREW C:925 , W C:929 , W C:933 , W C:936binding site for residue W C 930
082AL1SOFTWAREW C:921 , W C:926 , W C:927 , W C:932 , W C:935binding site for residue W C 931
083AL2SOFTWAREW C:931 , W C:933 , W C:934 , W C:935binding site for residue W C 932
084AL3SOFTWAREW C:930 , W C:932 , W C:934 , W C:936binding site for residue W C 933
085AL4SOFTWAREW C:925 , W C:926 , W C:932 , W C:933binding site for residue W C 934
086AL5SOFTWAREW C:923 , W C:928 , W C:931 , W C:932 , W C:936binding site for residue W C 935
087AL6SOFTWAREW C:928 , W C:930 , W C:933 , W C:935binding site for residue W C 936
088AL7SOFTWARETYR C:109 , THR C:110 , ARG C:115 , SER C:132 , ILE C:133 , LEU C:135 , GLN D:110 , ILE D:111 , PHE D:114 , PHE D:176 , GLU D:236binding site for residue QEL C 939
089AL8SOFTWAREPHE C:484 , PRO C:516 , LEU C:517 , THR C:518 , ARG C:523 , SER C:688 , ASP C:732 , PHE C:758binding site for residue GLY C 940
090AL9SOFTWAREHIS D:486 , SER D:512 , LEU D:513 , THR D:514 , ARG D:519 , GLY D:689 , SER D:690 , THR D:691 , TYR D:731 , ASP D:732binding site for residue GLU D 907
091AM1SOFTWAREASN A:203 , THR A:205binding site for Poly-Saccharide residues NAG A 946 through MAN A 951 bound to ASN A 203
092AM2SOFTWAREASN A:273 , ASN A:276binding site for Mono-Saccharide NAG A 943 bound to ASN A 276
093AM3SOFTWAREASN A:300binding site for Mono-Saccharide NAG A 944 bound to ASN A 300
094AM4SOFTWAREASN A:368 , HIS A:371 , VAL A:372 , ILE A:373binding site for Poly-Saccharide residues NAG A 938 through MAN A 941 bound to ASN A 368
095AM5SOFTWAREASN A:440binding site for Mono-Saccharide NAG A 945 bound to ASN A 440
096AM6SOFTWAREASN B:74binding site for Mono-Saccharide NAG B 912 bound to ASN B 74
097AM7SOFTWAREASN B:341binding site for Mono-Saccharide NAG B 913 bound to ASN B 341
098AM8SOFTWAREPRO B:687 , ASN B:688binding site for Poly-Saccharide residues NAG B 914 through MAN B 919 bound to ASN B 688
099AM9SOFTWAREASN C:300binding site for Mono-Saccharide NAG C 941 bound to ASN C 300
100AN1SOFTWAREASN C:368 , HIS C:371 , ILE C:373binding site for Poly-Saccharide residues NAG C 937 through NAG C 938 bound to ASN C 368
101AN2SOFTWAREASN C:440 , HIS C:449binding site for Poly-Saccharide residues NAG C 942 through MAN C 945 bound to ASN C 440
102AN3SOFTWAREASN D:74binding site for Mono-Saccharide NAG D 901 bound to ASN D 74
103AN4SOFTWAREASN D:341binding site for Mono-Saccharide NAG D 902 bound to ASN D 341
104AN5SOFTWAREPRO D:687 , ASN D:688binding site for Poly-Saccharide residues NAG D 903 through MAN D 906 bound to ASN D 688

(-) SS Bonds  (20, 20)

Asymmetric/Biological Unit
No.Residues
1A:79 -A:308
2A:420 -A:454
3A:436 -A:455
4A:744 -A:798
5A:810 -D:557
6B:86 -B:321
7B:214 -D:214
8B:429 -B:456
9B:436 -B:457
10B:557 -C:810
11B:746 -B:801
12C:79 -C:308
13C:420 -C:454
14C:436 -C:455
15C:561 -D:815
16C:744 -C:798
17D:86 -D:321
18D:429 -D:456
19D:436 -D:457
20D:746 -D:801

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala B:414 -Pro B:415
2Ala D:414 -Pro D:415

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PE5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PE5)

(-) Exons   (0, 0)

(no "Exon" information available for 4PE5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:743
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhh.eeeeeeee...hhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhh...eee....hhhhhh......eee...hhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhh....eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh.......eee..hhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhh..eeee..eeeee.....ee...eeeeeee..eeeeeeee....eee......................ee.eee......eeee.....................eeeee....eeeeeeehhhhhhhhhhhhh..ee..ee......eeeee......eeeeehhhhhh.....eeeeeee.hhhhhh............eeeeee..............hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh......ee....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....eeeeehhhhhhhh.....eee.........eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pe5 A  25 KIVNIGAVLSTRKHEQMFREAVNQANKRIQLQATSVTHKPNAIQMALSVCEDLISSQVYAILVSHTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLDMTGSGYVWLVGEREISGNALRYAPDGIIGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFAQYSIMNLQNRKLVQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTVPQCCYGFCIDLLIKLARTMQFTYEVHLVADGKFGTQERVQNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSCLWLLVGLSVHVVAVMLYLLDRSAMWFSWGVLLNAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQQVSLSILKSHENGFMEDLDKTWVRYQECDSRTCENMAGVFMLVAGGIVAGIFL 830
                                    34        44       |59        69        79        89    || 107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437   ||  455       465       475       485       495       505       515       525       535       545       555       565       575      |607       623       633       643       653  ||   670       680       690       700       710       720       730       740       750       760       770       780       790       800||     817       827   
                                                      52|                                  94|                                                                                                                                                                                                                                                                                                                                               441|                                                                                                                                 582|        616|                              656|                                                                                                                                      801|                     
                                                       58                                  103                                                                                                                                                                                                                                                                                                                                                450                                                                                                                                  605         623                               664                                                                                                                                       809                     


Chain B from PDB  Type:PROTEIN  Length:720
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeee...hhhhhhhh...........eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhhhhh...eeeeehhhhh..........eee...hhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh......eeeehhhhhh.............eeeee.....hhhhhhhhhhhhhhhhhhhhhh.........................hhhhhh..ee..ee.............eeeeee.....eeeeeeee..eeee............eeeeee.......eee.............eeeee...eeeeeehhhhhhhhhhhhhh..eeeeee...............hhhhhhhh....eee.......hhhhhhee.....eeeeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhh.........ee....hhhhhhhh..hhhhhhhh......hhhhhhhhhhhh...eeeeehhhhhhhhhh......ee......eeeee...ee.....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pe5 B  30 KSPPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDCKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRMTQDDHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSLEPFSACVWVMMFVMLLIVIGKAIWLLWGLVFNIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRNNYAEMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHVFYMLGAAMALSLITFISEHL 841
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389      |405       415       425       435   ||  456       466       476       486       496       506       516       526       536  ||   557       567 ||    609     ||633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       821       831       841
                                                                                                                                                                                                                                                                                                                                                                                                        396|                                 439|                                                                                     539|               569|          615|                                                                                                                                                                         802|                    
                                                                                                                                                                                                                                                                                                                                                                                                         403                                  451                                                                                      551                602           630                                                                                                                                                                          821                    


Chain C from PDB  Type:PROTEIN  Length:754
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhh...eee....hhhhhh......eee...hhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhh....eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh.......eee..hhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhh..eeee..eeeee.....ee...eeeeeee..eeeeeeee....eee......................ee.eee......eeee.....................eeeeee.......eeeeeeeehhhhhhhhhhhhh..ee..ee......eeeee......eeeeehhhhhhh....ee......hhhhhh..ee........eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh......ee....hhhhhhhhh...hhhhhhhhh.....hhhhhhhhhhh....eeeeehhhhhhhh.....eee............ee...hhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pe5 C  25 KIVNIGAVLSTRKHEQMFREAVNQANKRHGSWKIQLQATSVTHKPNAIQMALSVCEDLISSQVYAILVSHTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLDMTGSGYVWLVGEREISGNALRYAPDGIIGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFAQYSIMNLQNRKLVQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDGSPRHTVPQCCYGFCIDLLIKLARTMQFTYEVHLVADGKFGTQERVQNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRFMQPFQSCLWLLVGLSVHVVAVMLYLLDRSAMWFSWGVLLNMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQQVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTCENMAGVFMLVAGGIVAGIFLIFI 833
                                    34        44        54        64        74        84        94|      112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       445       455       465       475       485       495       505       515       525       535       545  ||   560       570       580 ||    612   ||  639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829    
                                                                                                94|                                                                                                                                                                                                                                                                                                                                               441|                                                                                                    548|                         582|        616|                                                                                                                                                                                                       
                                                                                                103                                                                                                                                                                                                                                                                                                                                                445                                                                                                     554                          605         634                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:727
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...hhhhhhhhhhh........eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhhhhhh..eeeeehhhhh..........eee...hhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhhh.....eeeee.hhhhhhhhhhhhhh........eeeehhhhhh.............eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh...hhhhhh..ee..ee............eeeeeee.....eeeeeeee..eeee............eeeeee.......eee.............eeeee..eeeeeehhhhhhhhhhhhhhh.eeeeee...............hhhhhhhh....eee.......hhhhh.ee.....eeeeeeee.......hhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh.........ee....hhhhhhhh..hhhhhhhh......hhhhhhhhhhhh...eeeeehhhhhhhhhh......ee......eeeee...ee.....hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pe5 D  32 PPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDCKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRMTQDDHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRFLEPFSACVWVMMFVMLLIGKAIWLLWGLVFIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRNNYAEMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHEVMSSQLDCDNMAGVFYMLGAAMALSLITFIS 838
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391    || 407       417       427       437 ||    459       469       479       489       499       509       519       529       539||     558       602       612 ||    637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797    || 811       821       831       
                                                                                                                                                                                                                                                                                                                                                                                                      396|                                 439|                                                                                     540|              567|         614|                                                                                                                                                                         802|                               
                                                                                                                                                                                                                                                                                                                                                                                                       403                                  452                                                                                      550               602          630                                                                                                                                                                          807
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PE5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PE5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PE5)

(-) Gene Ontology  (87, 119)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NMDE2_RAT | Q00960: 3jpw 3jpy 3qel 3qem 5b3j 5fxg 5fxh 5fxi 5fxj 5fxk 5tpz
        NMDZ1_RAT | P35439: 1pb7 1pb8 1pb9 1pbq 1y1m 1y1z 1y20 2a5t 3q41 4kcc 4kfq 4nf4 4nf5 4nf6 4nf8 5ddn 5ddx 5de4 5dex 5fxg 5fxh 5fxi 5fxj 5fxk 5i56 5i57 5i58 5i59 5jty 5u8c 5vih 5vii 5vij

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(no "Related Entries Specified in the PDB File" available for 4PE5)