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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BROMO-PWWP OF THE MOUSE ZINC FINGER MYND-TYPE CONTAINING 11 ISOFORM ALPHA IN COMPLEX WITH HISTONE H3.3K36ME3
 
Authors :  Y. Li, Y. Ren, H. Li
Date :  08 Oct 13  (Deposition) - 05 Mar 14  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tandem Bromodomain-Zinc Finger-Pwwp Motif, Histone H3. 3-Specific, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wen, Y. Li, Y. Xi, S. Jiang, S. Stratton, D. Peng, K. Tanaka, Y. Ren, Z. Xia, J. Wu, B. Li, M. C. Barton, W. Li, H. Li, X. Shi
Zmynd11 Links Histone H3. 3K36Me3 To Transcription Elongatio And Tumour Suppression
Nature V. 508 263 2014
PubMed-ID: 24590075  |  Reference-DOI: 10.1038/NATURE13045

(-) Compounds

Molecule 1 - ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 11
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 154-371
    Gene: BS69, ZMYND11
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ADENOVIRUS 5 E1A-BINDING PROTEIN, PROTEIN BS69
 
Molecule 2 - PEPTIDE FROM HISTONE H3.3
    Chains: B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1M3L1Mod. Amino AcidN-TRIMETHYLLYSINE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PO41Ligand/IonPHOSPHATE ION
4ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:258 , CYS A:261 , CYS A:277 , HIS A:281BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREARG A:268 , HIS A:313 , HIS A:314 , HIS A:315 , LYS A:345 , HOH A:550 , HOH A:571BINDING SITE FOR RESIDUE PO4 A 402
3AC3SOFTWAREALA A:220 , ALA A:241 , TYR A:245 , THR A:248BINDING SITE FOR RESIDUE PEG A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N4I)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile A:278 -Pro A:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N4I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N4I)

(-) Exons   (0, 0)

(no "Exon" information available for 4N4I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.......eeeeee...eeeeeeeeeee..eeeeee......eeeee...eee...hhhhh....hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n4i A 154 NKQEMGTYLRFIVSRMKERAIDLVDVPTIQEKVNEGKYRSYEEFKADAQLLLHNTVIFYGAASAQADIARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQKEDNQVDVRFFGHHHQRAWIPSENIQDITVNVHRLHVKRSMGWKKACDELELHQRFLREGRFWK 364
                                   163       173  ||   202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362  
                                                176|                                                                                                                                                                        
                                                 196                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4n4i B  29 APSTGGVkKPH  39
                                   |38 
                                  36-M3L
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N4I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N4I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N4I)

(-) Gene Ontology  (42, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:278 - Pro A:279   [ RasMol ]  
 

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  ZMY11_MOUSE | Q8R5C8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H33_HUMAN | P84243: 1pdq 2l43 3ask 3asl 3av2 3jvk 3muk 3mul 3ql9 3qla 3qlc 3wtp 4gne 4gnf 4gng 4gu0 4gur 4gus 4gy5 4h9n 4h9o 4h9p 4h9q 4h9r 4h9s 4hga 4l58 4o62 4qq4 4tmp 4u7t 4w5a 5ay8 5b32 5b33 5bnv 5bnx 5dwq 5dx0 5ja4 5jjy 5jlb 5kdm 5x7x
        ZMY11_MOUSE | Q8R5C8: 4n4g 4n4h

(-) Related Entries Specified in the PDB File

4n4g 4n4h