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(-) Description

Title :  CRYSTAL STRUCTURE OF LSD2 WITH H3
 
Authors :  F. Chen, H. Yang, Z. Dong, J. Fang, T. Zhu, W. Gong, Y. Xu
Date :  29 Aug 12  (Deposition) - 13 Feb 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,E  (1x)
Biol. Unit 2:  B,D,F  (1x)
Keywords :  Histone Demethylase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Chen, H. Yang, Z. Dong, J. Fang, P. Wang, T. Zhu, W. Gong, R. Fang, Y. G. Shi, Z. Li, Y. Xu
Structural Insight Into Substrate Recognition By Histone Demethylase Lsd2/Kdm1B
Cell Res. V. 23 306 2013
PubMed-ID: 23357850  |  Reference-DOI: 10.1038/CR.2013.17

(-) Compounds

Molecule 1 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1B
    Chains: A, B, C, D
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC1
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 51-822
    Gene: LSD2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LSD2, FLAVIN-CONTAINING AMINE OXIDASE DOMAIN-CONTAINING PROTEIN 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE 2
 
Molecule 2 - HISTONE H3.3
    Chains: E, F
    Engineered: YES
    Fragment: UNP RESIDUES 2-27
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: H3K4 IS MUTATED TO MET
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A C E 
Biological Unit 2 (1x):  B D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2ZN12Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2ZN-1Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:388 , GLY A:389 , PRO A:392 , ALA A:393 , LEU A:411 , GLU A:412 , ALA A:413 , LYS A:414 , GLY A:419 , ARG A:420 , ARG A:434 , GLY A:435 , ALA A:436 , GLN A:437 , ILE A:438 , PRO A:597 , VAL A:598 , VAL A:627 , PRO A:628 , TRP A:757 , TRP A:762 , GLY A:794 , GLU A:795 , GLN A:803 , THR A:804 , VAL A:805 , ALA A:808 , HOH A:1005BINDING SITE FOR RESIDUE FAD A 901
02AC2SOFTWARECYS A:53 , CYS A:58 , HIS A:84 , HIS A:90BINDING SITE FOR RESIDUE ZN A 902
03AC3SOFTWARECYS A:65 , CYS A:73 , CYS A:92 , CYS A:95BINDING SITE FOR RESIDUE ZN A 903
04AC4SOFTWARECYS A:142 , CYS A:147 , CYS A:169 , CYS A:185BINDING SITE FOR RESIDUE ZN A 904
05AC5SOFTWAREILE B:388 , GLY B:389 , PRO B:392 , ALA B:393 , LEU B:411 , GLU B:412 , ALA B:413 , LYS B:414 , GLY B:419 , ARG B:420 , ARG B:434 , GLY B:435 , ALA B:436 , ILE B:438 , PRO B:597 , VAL B:598 , VAL B:627 , PRO B:628 , TRP B:757 , TRP B:762 , GLY B:794 , GLU B:795 , GLN B:803 , THR B:804 , VAL B:805 , ALA B:808 , HOH B:1004BINDING SITE FOR RESIDUE FAD B 901
06AC6SOFTWARECYS B:53 , CYS B:58 , HIS B:84 , HIS B:90BINDING SITE FOR RESIDUE ZN B 902
07AC7SOFTWARECYS B:65 , CYS B:73 , CYS B:92 , CYS B:95BINDING SITE FOR RESIDUE ZN B 903
08AC8SOFTWARECYS B:142 , CYS B:147 , CYS B:169 , CYS B:185BINDING SITE FOR RESIDUE ZN B 904
09AC9SOFTWAREGLY C:389 , GLY C:391 , PRO C:392 , ALA C:393 , LEU C:411 , GLU C:412 , ALA C:413 , LYS C:414 , GLY C:419 , ARG C:420 , ARG C:434 , GLY C:435 , ALA C:436 , GLN C:437 , ILE C:438 , PRO C:597 , VAL C:598 , VAL C:627 , TRP C:757 , TRP C:762 , GLY C:794 , GLU C:795 , GLN C:803 , THR C:804 , VAL C:805 , ALA C:808 , HOH C:1109BINDING SITE FOR RESIDUE FAD C 901
10BC1SOFTWARECYS C:53 , CYS C:58 , HIS C:84 , HIS C:90BINDING SITE FOR RESIDUE ZN C 902
11BC2SOFTWARECYS C:65 , CYS C:73 , CYS C:92 , CYS C:95BINDING SITE FOR RESIDUE ZN C 903
12BC3SOFTWARECYS C:142 , CYS C:147 , CYS C:169 , CYS C:185BINDING SITE FOR RESIDUE ZN C 904
13BC4SOFTWAREGLY D:389 , ALA D:390 , GLY D:391 , PRO D:392 , ALA D:393 , LEU D:411 , GLU D:412 , ALA D:413 , LYS D:414 , GLY D:419 , ARG D:420 , ARG D:434 , GLY D:435 , ALA D:436 , GLN D:437 , ILE D:438 , PRO D:597 , VAL D:598 , VAL D:627 , PRO D:628 , TRP D:757 , TRP D:762 , GLY D:794 , GLU D:795 , GLN D:803 , THR D:804 , VAL D:805 , ALA D:808 , HOH D:1012BINDING SITE FOR RESIDUE FAD D 901
14BC5SOFTWARECYS D:53 , CYS D:58 , HIS D:84 , HIS D:90BINDING SITE FOR RESIDUE ZN D 902
15BC6SOFTWARECYS D:65 , CYS D:73 , CYS D:92 , CYS D:95BINDING SITE FOR RESIDUE ZN D 903
16BC7SOFTWARECYS D:142 , CYS D:147 , CYS D:169 , CYS D:185BINDING SITE FOR RESIDUE ZN D 904

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GU0)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Gly A:370 -Ala A:371
2Ala A:371 -Asp A:372
3Glu A:470 -Gly A:471
4Asn A:640 -Pro A:641
5Val B:369 -Gly B:370
6Gly B:370 -Ala B:371
7Glu B:470 -Gly B:471
8Asn B:640 -Pro B:641
9Val C:369 -Gly C:370
10Gly C:370 -Ala C:371
11Glu C:470 -Gly C:471
12Asn C:640 -Pro C:641
13Val D:369 -Gly D:370
14Gly D:370 -Ala D:371
15Glu D:470 -Gly D:471
16Asn D:640 -Pro D:641

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GU0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GU0)

(-) Exons   (0, 0)

(no "Exon" information available for 4GU0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:748
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................ee.....eehhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhh....eee........eee.......hhhhhhhh.......................hhhhhh..hhhhhh...........hhhhhh..hhhhh.................................hhhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.................hhhhh..eeeee..hhhhhhhhhhhhhhh.eeeee...........eeeee..eeee....ee.....hhhhhhhhh.....ee......ee.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee...hhhhhhhhhh...eee....eeeee.....eeeee....eeee.eeee..hhhhhhh...eee...hhhhhhhhhhee...eeeeeee.....hhhhhh...eeee.........eeeeeee........eeeeeee.hhhh.....hhhhhhhhhhhhhhhhh.........eeee..............ee.....hhhhhhhhh.....eee.hhhhh.....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu0 A  47 PLGSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 822
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814        
                                                                                                                                                                                                                      235|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                                                                                       264                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:748
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................eeee..eeehhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhh...eee........eee.......hhhhhhhh.......................hhhhhhhhhhhhhhh...........hhhhh..hhhhh.................................hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhh........................eeeee..hhhhhhhhhhhhhhh.eeeee...........ee.......ee....ee.....hhhhhhhhh.....ee......ee.......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhh.....hhhhhh.......ee...hhhhhhhhhhh..eee....eeeee.....eeeee....eeee.eeee..hhhhhhh...eee...hhhhhhhhh.ee...eeeeeee.....hhhhhh...eeee.........eeeeeee........eeeeeeehhhhhhh...hhhhhhhhhhhhhhhhh.........eeee..............ee.....hhhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu0 B  47 PLGSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 822
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814        
                                                                                                                                                                                                                      235|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                                                                                       264                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:736
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................eeee..eeehhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhh...eee........eee.......hhhhhhhh....hhhhh...hhhhhh.hhhhhhh...........hhhhh...hhhhhh................................hhhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhhhhhh....hhhhhhhhhhhhhhhhhhhh........................eeeee..hhhhhhhhhhhhhhh.eeeee...........ee.......ee....eee....hhhhhhhhhh....ee......ee.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...........hhhhhh......eee...hhhhhhhhhhh...ee....eeeee.....eeeee....eeee.eeee..hhhhhhhh..eee...hhhhhhhhhheeee..eeeeee.....hhhhhh...eeee....hhhh.eeeeeee........eeeeee.hhhhhh....hhhhhhhhhhhhhhhhh.........eeee.hhhhh......eeee......hhhhhhh......eee.hhhhh.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu0 C  48 LGSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMDHCSLPEDLRVLEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 822
                                    57        67        77        87        97       107       117       127       137       147       157       167   ||  188       198       208       218       228      |266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816      
                                                                                                                                                     171|                                                 235|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                      183                                                  264                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:735
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................eeee..eeehhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhhh...eee........eee.......hhhhhhhh............hhhhhh..hhhhhh............hhhhh..hhhhhh................................hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh................hhhhh..eeeee..hhhhhhhhhhhhhhh.eeeee...........ee.......ee....eee....hhhhhhhhhh....ee......ee.......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...........hhhhhh......eee...hhhhhhhhhh....ee....eeeee.....eeeee....eeee.eeee..hhhhhhhh..eee...hhhhhhhhhheeee..eeeeee.....hhhhhh...eeee.........eeeeeee........eeeeee.hhhhhh....hhhhhhhhhhhhhhhhh.........eeee.hhhhh......eeee.....hhhhhhhhh.....eee.hhhhh.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu0 D  49 GSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMDHCSLPEDLRVLEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 822
                                    58        68        78        88        98       108       118       128       138       148       158       168  ||   189       199       209       219       229     ||267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817     
                                                                                                                                                    171|                                                 235|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                     183                                                  264                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              


Chain E from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author hhhhh..................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 4gu0 E   1 ARTMQTARKSTGGKAPRKQLATKAAR  26
                                    10        20      


Chain F from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author hhhhh..................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 4gu0 F   1 ARTMQTARKSTGGKAPRKQLATKAAR  26
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GU0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GU0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GU0)

(-) Gene Ontology  (44, 47)

Asymmetric Unit(hide GO term definitions)

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  4gu0
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  H33_HUMAN | P84243
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  KDM1B_HUMAN | Q8NB78
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H33_HUMAN | P84243: 1pdq 2l43 3ask 3asl 3av2 3jvk 3muk 3mul 3ql9 3qla 3qlc 3wtp 4gne 4gnf 4gng 4gur 4gus 4gy5 4h9n 4h9o 4h9p 4h9q 4h9r 4h9s 4hga 4l58 4n4i 4o62 4qq4 4tmp 4u7t 4w5a 5ay8 5b32 5b33 5bnv 5bnx 5dwq 5dx0 5ja4 5jjy 5jlb 5kdm 5x7x
        KDM1B_HUMAN | Q8NB78: 4fwe 4fwf 4fwj 4gu1 4gur 4gus 4gut 4guu 4hsu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4GU0)