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(-) Description

Title :  CW-TYPE ZINC FINGER OF MORC3 IN COMPLEX WITH THE AMINO TERMINUS OF HISTONE H3
 
Authors :  Y. Liu, W. Tempel, A. Dong, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J Structural Genomics Consortium (Sgc)
Date :  26 Jun 14  (Deposition) - 20 Aug 14  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, W. Tempel, Q. Zhang, X. Liang, P. Loppnau, S. Qin, J. Min
Family-Wide Characterization Of Histone Binding Abilities O Human Cw Domain-Containing Proteins.
J. Biol. Chem. V. 291 9000 2016
PubMed-ID: 26933034  |  Reference-DOI: 10.1074/JBC.M116.718973

(-) Compounds

Molecule 1 - MORC FAMILY CW-TYPE ZINC FINGER PROTEIN 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 400-460
    Gene: KIAA0136, MORC3, ZCWCC3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3
 
Molecule 2 - HISTONE H3.3
    Chains: C, D
    Engineered: YES
    Fragment: UNP RESIDUES 2-16
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2M3L2Mod. Amino AcidN-TRIMETHYLLYSINE
3UNX7Ligand/IonUNKNOWN ATOM OR ION
4ZN3Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:436 , ZN A:2005 , CYS B:446BINDING SITE FOR RESIDUE CL A 2003
2AC2SOFTWARECYS A:446 , ZN A:2005 , SER B:436BINDING SITE FOR RESIDUE CL A 2004
3AC3SOFTWAREPRO A:406 , ASP A:407 , GLN A:408 , THR A:409 , TRP A:410 , VAL A:411 , GLN A:412 , TRP A:419 , ASP A:424 , PRO A:430 , GLU A:431 , GLU A:453 , HOH A:2103 , ASP B:407 , GLU B:431 , HOH C:201 , HOH C:202 , HOH C:203 , HOH C:204 , HOH C:205 , HOH C:206 , M3L D:4 , GLN D:5 , THR D:6 , ALA D:7BINDING SITE FOR CHAIN C OF HISTONE H3.3
4AC4SOFTWAREGLN A:428 , LEU A:429 , PRO A:430 , GLU A:431 , HOH A:2111 , PRO B:406 , ASP B:407 , GLN B:408 , THR B:409 , TRP B:410 , VAL B:411 , GLN B:412 , TRP B:419 , ASP B:424 , PRO B:430 , GLU B:431 , HOH B:2122 , ALA C:1 , ARG C:2 , THR C:3 , HOH C:201 , HOH C:202 , HOH D:201 , HOH D:202 , HOH D:204 , HOH D:205BINDING SITE FOR CHAIN D OF HISTONE H3.3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 4QQ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:48
                                                                                
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee......eeee...........hhhhh.hhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 4qq4 A 406 PDQTWVQCDACLKWRKLPDGMDQLPEKWYCSNNPDPQFRNCEVPEEPE 453
                                   415       425       435       445        


Chain B from PDB  Type:PROTEIN  Length:48
                                                                                
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee......eeee...........hhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 4qq4 B 406 PDQTWVQCDACLKWRKLPDGMDQLPEKWYCSNNPDPQFRNCEVPEEPE 453
                                   415       425       435       445        


Chain C from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ..eeee... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4qq4 C   1 ARTkQTARK   9
                               |     
                               4-M3L 


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ..eeee... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4qq4 D   1 ARTkQTARK   9
                               |     
                               4-M3L
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQ4)

(-) Gene Ontology  (42, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  4qq4
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  H33_HUMAN | P84243
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  MORC3_HUMAN | Q14149
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H33_HUMAN | P84243: 1pdq 2l43 3ask 3asl 3av2 3jvk 3muk 3mul 3ql9 3qla 3qlc 3wtp 4gne 4gnf 4gng 4gu0 4gur 4gus 4gy5 4h9n 4h9o 4h9p 4h9q 4h9r 4h9s 4hga 4l58 4n4i 4o62 4tmp 4u7t 4w5a 5ay8 5b32 5b33 5bnv 5bnx 5dwq 5dx0 5ja4 5jjy 5jlb 5kdm 5x7x
        MORC3_HUMAN | Q14149: 5svi 5svx 5svy

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QQ4)