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(-) Description

Title :  CW-TYPE ZINC FINGER OF ZCWPW2 IN COMPLEX WITH THE AMINO TERMINUS OF HISTONE H3
 
Authors :  Y. Liu, W. Tempel, A. Dong, P. Loppnau, C. Bountra, J. Weigelt, C. H. Arro A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Date :  20 Dec 13  (Deposition) - 26 Mar 14  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Zinc Finger, Histone, Structural Genomics, Structural Genomics Consortium, Sgc, Metal-Dna Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, W. Tempel, Q. Zhang, X. Liang, P. Loppnau, S. Qin, J. Min
Family-Wide Characterization Of Histone Binding Abilities O Human Cw Domain-Containing Proteins.
J. Biol. Chem. V. 291 9000 2016
PubMed-ID: 26933034  |  Reference-DOI: 10.1074/JBC.M116.718973

(-) Compounds

Molecule 1 - ZINC FINGER CW-TYPE PWWP DOMAIN PROTEIN 2
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-MHL
    Expression System Strain: BL21 (DE3)-V2R-PRARE2
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 21-78
    Gene: ZCWPW2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - HISTONE H3.3
    Chains: D
    Engineered: YES
    Fragment: UNP RESIDUES 2-12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHETIC PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 31)

Asymmetric/Biological Unit (3, 31)
No.NameCountTypeFull Name
1M3L1Mod. Amino AcidN-TRIMETHYLLYSINE
2UNX27Ligand/IonUNKNOWN ATOM OR ION
3ZN3Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:33 , CYS A:38 , CYS A:60 , CYS A:71BINDING SITE FOR RESIDUE ZN A 1001
2AC2SOFTWARECYS B:33 , CYS B:38 , CYS B:60 , CYS B:71BINDING SITE FOR RESIDUE ZN B 1001
3AC3SOFTWARECYS C:33 , CYS C:38 , CYS C:60 , CYS C:71BINDING SITE FOR RESIDUE ZN C 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O62)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O62)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O62)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O62)

(-) Exons   (0, 0)

(no "Exon" information available for 4O62)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:56
                                                                                       
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........eee.hhhhhhhh......hhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                  4o62 A 22 ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEED 77
                                    31        41        51        61        71      


Chain B from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee........eee.hhhhhhhh......hhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  4o62 B 22 ENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDF 78
                                    31        41        51        61        71       


Chain C from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee........eee.hhhhhhhh......hhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  4o62 C 21 VENMYVNKVWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEED 77
                                    30        40        50        60        70       


Chain D from PDB  Type:PROTEIN  Length:6
                                     
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ..eee. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                  4o62 D  1 ARTkQT  6
                               |  
                               4-M3L
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O62)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O62)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O62)

(-) Gene Ontology  (31, 36)

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  4o62
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  ZCPW2_HUMAN | Q504Y3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H33_HUMAN | P84243: 1pdq 2l43 3ask 3asl 3av2 3jvk 3muk 3mul 3ql9 3qla 3qlc 3wtp 4gne 4gnf 4gng 4gu0 4gur 4gus 4gy5 4h9n 4h9o 4h9p 4h9q 4h9r 4h9s 4hga 4l58 4n4i 4qq4 4tmp 4u7t 4w5a 5ay8 5b32 5b33 5bnv 5bnx 5dwq 5dx0 5ja4 5jjy 5jlb 5kdm 5x7x
        ZCPW2_HUMAN | Q504Y3: 4z0o 4z0r

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4O62)